1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AGCCGTGGGGAATGTTAGCATGGAGGAAAAGCAAATCTTCCAAAATGTACAACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAATTGGCAGAACgtgagtagtccactcttaaaattgaataaaattgttgcatctaagcctattttactgtatttttgtttttgaagttatgatttcaaattttttgctctat...
species | Glycine max |
transcript | GLYMA12G31040.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAATTGGCAGAAC GTTCGCTGCCTGTATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTTEST: gi|31309902|gb|CD395105.1|CD395105
genomic: GAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAATTGGCAGAACgtgagtagtc ... ttaatttcagGTTCGCTGCCTGTATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTT
EST: AACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAATTGGCAGAAC GTTCGCTGCCTGTATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTTEST: gi|193426837|gb|FK392580.1|FK392580
genomic: AACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAATTGGCAGAACgtgagtagtc ... ttaatttcagGTTCGCTGCCTGTATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTT
EST: AATTGGCAGAAC GTTCGCTGCCTGTATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTTEST: gi|193534919|gb|FK489083.1|FK489083
genomic: AATTGGCAGAACgtgagtagtc ... ttaatttcagGTTCGCTGCCTGTATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTT
EST: AACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAATTGGCAGAAC GTTCGCTGCCTGTATCTGAAGAGTACCATEST: gi|207748325|gb|GD718510.1|GD718510
genomic: AACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAATTGGCAGAACgtgagtagtc ... ttaatttcagGTTCGCTGCCTGTATCTGAAGAGTACCAT
EST: AACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAATTGGCAGAAC GTTCGCTGCCTGTATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTTEST: gi|208133167|gb|GD932108.1|GD932108
genomic: AACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAATTGGCAGAACgtgagtagtc ... ttaatttcagGTTCGCTGCCTGTATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTT
EST: AACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAATTGGCAGAAC GTTCGCTGCCTGTATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTTEST: gi|208309504|gb|GE103366.1|GE103366
genomic: AACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAATTGGCAGAACgtgagtagtc ... ttaatttcagGTTCGCTGCCTGTATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTT
EST: AACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAATTGGCAGAAC GTTCGCTGCCTGTATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTTEST: gi|207829138|gb|GD800102.1|GD800102
genomic: AACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAATTGGCAGAACgtgagtagtc ... ttaatttcagGTTCGCTGCCTGTATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTT
EST: AACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAATTGGCAGAAC GTTCGCTGCCTGTATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTTEST: gi|254329948|gb|GR839501.1|GR839501
genomic: AACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAATTGGCAGAACgtgagtagtc ... ttaatttcagGTTCGCTGCCTGTATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTT
EST: AACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAATTGGCAGAAC GTTCGCTGCCTGTATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTTEST: gi|6952084|gb|AW424152.1|AW424152
genomic: AACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAATTGGCAGAACgtgagtagtc ... ttaatttcagGTTCGCTGCCTGTATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTT
EST: AACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAATTGGCAGAAC GTTCGCTGCCTGTATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTTEST: gi|151413165|gb|EV282973.1|EV282973
genomic: AACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAATTGGCAGAACgtgagtagtc ... ttaatttcagGTTCGCTGCCTGTATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTT
EST: AACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAATTGGCAGAAC GTTCGCTGCCTGTATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTTEST: gi|193513031|gb|FK470901.1|FK470901
genomic: AACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAATTGGCAGAACgtgagtagtc ... ttaatttcagGTTCGCTGCCTGTATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTT
EST: AACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAATTGGCAGAAC GTTCGCTGCCTGTATCTGAAGAATACCATGGGGAAATCGTACCGTGTCTTTEST: gi|26059923|gb|CA802837.1|CA802837
genomic: AACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAATTGGCAGAACgtgagtagtc ... ttaatttcagGTTCGCTGCCTGTATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTT
EST: AACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAATTGGCAGAAC GTTCGCTGCCTGTATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTTEST: gi|209707025|gb|BW683262.1|BW683262
genomic: AACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAATTGGCAGAACgtgagtagtc ... ttaatttcagGTTCGCTGCCTGTATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTT
EST: AACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAATTGGCAGAAC GTTCGCTGCCTGTATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTTEST: gi|18716199|gb|BM522876.1|BM522876
genomic: AACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAATTGGCAGAACgtgagtagtc ... ttaatttcagGTTCGCTGCCTGTATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTT
EST: AACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAATTGGCAGAAC GTTCGCTGCCTGTATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTTEST: gi|24205182|gb|BU964435.1|BU964435
genomic: AACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAATTGGCAGAACgtgagtagtc ... ttaatttcagGTTCGCTGCCTGTATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTT
EST: AACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAATTGGCAGAAC GTTCGCTGCCTGTATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTTEST: gi|193441316|gb|FK410025.1|FK410025
genomic: AACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAATTGGCAGAACgtgagtagtc ... ttaatttcagGTTCGCTGCCTGTATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTT
EST: GAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAATTGGCAGAAC GTTCGCTGCCTGTATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTTEST: gi|193427346|gb|FK396172.1|FK396172
genomic: GAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAATTGGCAGAACgtgagtagtc ... ttaatttcagGTTCGCTGCCTGTATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTT
EST: GTCTCTTTGTTGAAAAAGAATTGGCAGAAC GTTCGCTGCCTGTATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTTEST: gi|192315373|gb|FK009637.1|FK009637
genomic: GTCTCTTTGTTGAAAAAGAATTGGCAGAACgtgagtagtc ... ttaatttcagGTTCGCTGCCTGTATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTT
EST: AACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAATTGGCAGAAC GTTCGCTGCCTGTATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTTEST: gi|12496286|gb|BG046997.1|BG046997
genomic: AACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAATTGGCAGAACgtgagtagtc ... ttaatttcagGTTCGCTGCCTGTATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTT
EST: AACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAATTGGCAGAAC GTTCGCTGCCTGTATCTGAAGAGTACCATGGGGAAATCGTACCGGGTCTTTEST: gi|14010951|gb|BG725881.1|BG725881
genomic: AACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAATTGGCAGAACgtgagtagtc ... ttaatttcagGTTCGCTGCCTGTATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTT
EST: AACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAATTGGCAGAAC GTTCGCTGCCTGTATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTTEST: gi|209724743|gb|BW677785.1|BW677785
genomic: AACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAATTGGCAGAACgtgagtagtc ... ttaatttcagGTTCGCTGCCTGTATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTT
EST: AACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAATTGGCAGAAC GTTCGCTGCCTGTATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTTEST: gi|208272803|gb|GE066267.1|GE066267
genomic: AACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAATTGGCAGAACgtgagtagtc ... ttaatttcagGTTCGCTGCCTGTATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTT
EST: AACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAATTGGCAGAAC GTTCGCTGCCTGTATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTTEST: gi|31310979|gb|CD396182.1|CD396182
genomic: AACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAATTGGCAGAACgtgagtagtc ... ttaatttcagGTTCGCTGCCTGTATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTT
EST: AACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAATTGGCAGAAC GTTCGCTGCCTGTATCTGAAGAGTACCCCTGGGGAAATCGTACCGTGTCTTEST: gi|193561529|gb|FK518578.1|FK518578
genomic: AACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAATTGGCAGAACgtgagtagtc ... ttaatttcagGTTCGCTGCCTGTATCTGAAGAGTACCA-TGGGGAAATCGTACCGTGTCTT
EST: AACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAATTGGCAGAAC GTTCGCTGCCTGTATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTTEST: gi|207689269|gb|GD670822.1|GD670822
genomic: AACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAATTGGCAGAACgtgagtagtc ... ttaatttcagGTTCGCTGCCTGTATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTT
EST: GAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAATTGGCAGAAC GTTCGCTGCCTGTATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTTEST: gi|207760119|gb|GD730866.1|GD730866
genomic: GAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAATTGGCAGAACgtgagtagtc ... ttaatttcagGTTCGCTGCCTGTATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTT
EST: AACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAATTGGCAGAAC GTTCGCTGCCTGTATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTTEST: gi|120495150|gb|EH223317.1|EH223317
genomic: AACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAATTGGCAGAACgtgagtagtc ... ttaatttcagGTTCGCTGCCTGTATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTT
EST: AACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAATTGGCAGAAC GTTCGCTGCCTGTATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTT
genomic: AACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAATTGGCAGAACgtgagtagtc ... ttaatttcagGTTCGCTGCCTGTATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCCGTGGGGAATGTTAGCATGGAGGAAAAGCAAATCTTCCAAAATGTACAACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAATTGGCAGAACgtgagtagtccactcttaaaattgaataaaattgttgcatctaagcctattttactgtatttttgtttttgaagttatgatttcaaattttttgctctat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA