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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATTGATTATGAAAATGGTGGAACATCCTAATATAGTCAATCTCATTGAGGTGATTGATGATCCAGAGTCGGATGACTTCTACATGGgtacccaatgctagtttcttggttttgttatttagtgatgacagctcctgtaatttgtacatatgttttgagcctcaagtttaattaagaatctccaataagttctatgattaactgccgttgtttacttttacag

Basic information

species Glycine max
transcript GLYMA12G29640.4
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G29640.4 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os03g50330.1 (Oryza sativa), 5'ss of exon 6
GTATTGATTATGAAAATGGTGGAACATCCTAATATAGTCAATCTCATTGAGGTGATTGATGATCCAGAGTCGGATGACTTCTACATGGgtacccaatgctagtttcttggttttgttatttagtgatgacagctcctgtaatttgtacatatgttttgagcctcaagtttaattaagaatctccaataagttc----tatgat--taactgccgttgtttacttttacag----
||||  || ||||||||| |||| |||||||||||||| ||||||||||| ||||||||||| ||| |  | ||| | |||||||||||||   ||||  | | || |  ||||   |   | |  |  |   |  | |||||    |||  | |||      | |  ||  || || ||||  | | | |||    ||| ||  || ||  | ||||  | |  ||  |    
GTATCCATCATGAAAATGTTGGATCATCCTAATATAGTAAATCTCATTGAAGTGATTGATGACCCAAATGCAGATAAATTCTACATGGgtatgtaatgacattctcattttttttaaaaaaaatagtttccttttgtttaattgtagcatgagatttttcttgctaactt--ttgagcatctttatttaattctccatattattctacctaacattgtccattggtattgccag

upper sequence: GLYMA12G29640.4 (Glycine max), 5'ss of exon 5
lower sequence: AT3G45240.3 (Arabidopsis thaliana), 5'ss of exon 7
GTATTGATTATGAAAATGGTGGAACATCCTAATATAGTCAATCTCATTGAGGTGATTGATGATCCAGAGTCGGATGACTTCTACATGGgtacccaatgctagtttcttggttttgttatttagtgatgacagctcctgtaatttgtacatatgttttgagcctcaagtttaattaagaatctccaataagttctatgattaactgccgttgtttacttttacag
||  ||||||||||||   |||| ||||||||||| || ||||||||||||||||||||||| || ||||  ||||| || ||||||||||     |     |  ||  | ||||| || | || |   ||  || |    |||||   |    ||  |   |   ||||  |  | |                                              
GTTATGATTATGAAAACCCTGGAGCATCCTAATATCGTTAATCTCATTGAGGTGATTGATGACCCTGAGTTTGATGATTTTTACATGGgtatttctt-----tccctctgctttgt-atatcgttacctcaagtctttctctttgtctgtcatcttatattgtgttgtttcttgtatag---------------------------------------------

upper sequence: GLYMA12G29640.4 (Glycine max), 5'ss of exon 5
lower sequence: AT5G60550.1 (Arabidopsis thaliana), 5'ss of exon 7
GTATTGATTATGAAAATGGTGGAACATCCTAATATAGTCAATCTCATTGAGGTGATTGATGATCCAGAGTCGGATGACTTCTACATGGgtacccaatgctagtttcttggttttgttatttagtgatgacagctcctgtaatttgtacatatgttttgagcctcaagtttaattaagaatctccaataagttctatgattaactgccgttgtttacttttacag
||  |||||||||||||  |||| |||||||| || || || |||||||||||||| ||||| || ||  | ||| | || |||||||||||  ||| ||  |||||   || |  | ||| |  || | |    ||||     |  | | |  | | |   |     |   |   |  ||||| |                                      
GTTATGATTATGAAAATTTTGGAGCATCCTAACATCGTTAACCTCATTGAGGTGATAGATGACCCTGAAACTGATCATTTTTACATGGgtacttaat-ctcctttctcttttctactgttttgatat-atactctctgtggaaagagcctttaatcttataatgcctgtctttctggcttctcctag-------------------------------------

upper sequence: GLYMA12G29640.4 (Glycine max), 5'ss of exon 5
lower sequence: Vv06s0004g02990.t01 (Vitis vinifera), 5'ss of exon 7
GTATTGATTATGAAAATGGTGGAACATCCTAATATAGTCAATCTCATTGAGGTGATTGATGATCCAGAGTCGGATGACTTCTACATGGgtacccaatgctagtttcttggttttgtt-------atttagtgatgacagctcctgtaatt-----tgtacatatgttttgagcctcaagtttaa----ttaagaatctccaa-taagttctatgattaactgccgttg----tttacttttacag
|| ||||| ||||||||| || | ||||| |||||||||||||||||||||||||||||||| |||    | ||| ||||||| |||||||   | ||| | ||||||    || ||       ||||  |     ||  |  ||| |||     |||  |  | || |       |  ||| |    |||| |||   ||  | | ||   || || |||||   |     |||  || | |||
GTTTTGATCATGAAAATGTTGAACCATCCAAATATAGTCAATCTCATTGAGGTGATTGATGACCCAAGCACAGATCACTTCTATATGGgtatttattgccactttctttcccttctttgtatgcattttttcccatcaaattatgtgattaagtatgttaaccttttcttgcatgaagattttactttttaaaaattagcaggttaatttactgtttgactgcaaattcatttttttttcttcag