Sequence
atgc intronic sequence ATGC exonic sequenceGGTTTTTCTTGTAAAAGGACCAATTTACTTGGTCTGCATCAGCTGCACAGAAGAGCCTTATGAGTCACTAAGGGGGCAGTTGGAGCTTATTCATGGTCAGgtataactgagttggacttgagttggatgcttgtatgtcccaagaaaaatgatttgctgtttgcttgcttgctattcctgtttcttcagcttttgtttctcaacttgctattgtgtctttttttgtcattcagatgaactagttatgttgcagcagttgtatgatatatccctgttgttgatatgtgtgcag
Basic information
species | Glycine max |
transcript | GLYMA12G29450.3 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA12G29450.3 (Glycine max), 5'ss of exon 5
lower sequence: AT2G28390.1 (Arabidopsis thaliana), 5'ss of exon 5
GGTTTTTCTTGTAAAAGGACCAATTTACTTGGTCTGCATCAGCTGCACAGAAGAGCCTTATGAGTCACTAAGGGGGCAGTTGGAGCTTATTCATGGTCAGgtataactgagttggacttgagttggatgcttgtatgtcccaagaaaaatgatttgctgtttgcttgcttgctattcctgtttc---ttcagcttttgtttctcaacttgctattgtgtctttttttgtcattcagatgaactagttatgttgcagcagttgtatgatatatccctgttgttgatatgtgtgcag
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TGTCTTTCTCGTTAAGGGGCCAATATATCTGGTCTGCATCAGCTGTACAGATGAAACATATGAGTATTTAAGGGGGCAGTTGGATCTTCTATATGGTCAGgtaaaaaatagtctg--ctgctctgtatcctt------tctttgtaacat--tttcatgtttgagtgagcggtttaaataaccaaaatgcaatattggtgatgcag-----------------------------------------------------------------------------------------
upper sequence: GLYMA12G29450.3 (Glycine max), 5'ss of exon 5
lower sequence: Vv06s0004g02820.t01 (Vitis vinifera), 5'ss of exon 5
GGTTTTTCTTGTAAAAGGACCAATTTACTTGGTCTGCATCAGCTGCACAGAAGAGCCTTATGAGTCACTAAGGGGGCAGTTGGAGCTTATTCATGGTCAGgtataactgagttggacttgagttggatgcttgtatgtcccaagaaaaatgatttgctgtttgcttgcttgctattcctgtttcttcagcttttgtttctcaacttgctattgtgtctttttttgtcattcagatgaactagttatgttgcagcagttgtatgatatatccctgttgttgatatgtgtgcag
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GGTTTTTCTAGTGAAAGGACCAATTTACTTAGTTTGCATCAGCTGTACAGAAGAGCCTTACGAGTCATTAAGAAGTCAGTTGGAGCTTATTTATGGTCAGgtagcattag--tcatttctcgccacaaaattcctcttcagttgtgtttgggtgtgttatactattctatgcttttttttttgcatgtgcatttgttttaaa------------------------------------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|9564602|gb|BE474111.1|BE474111EST: AAGAGCCTTATGAGTCACTAAGGGGGCAGTTGGAGCTTATTCATGGTCAG ATGATTGTTATACTAACAAAGTCAGTAAACAGATGTTTTGAGAAGAATCCG
genomic: AAGAGCCTTATGAGTCACTAAGGGGGCAGTTGGAGCTTATTCATGGTCAGgtataactga ... atgtgtgcagATGATTGTTATACTAACAAAGTCAGTAAACAGATGTTTTGAGAAGAATCCG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGTTTTTCTTGTAAAAGGACCAATTTACTTGGTCTGCATCAGCTGCACAGAAGAGCCTTATGAGTCACTAAGGGGGCAGTTGGAGCTTATTCATGGTCAGgtataactgagttggacttgagttggatgcttgtatgtcccaagaaaaatgatttgctgtttgcttgcttgctattcctgtttcttcagcttttgtttctcaacttgctattgtgtctttttttgtcattcagatgaactagttatgttgcagcagttgtatgatatatccctgttgttgatatgtgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT