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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACAGCTACTTTTATCCTTATCTTCCACTTCATTCCTCTCTATGGCCAGACACACATAATGGTTTATATCGGTGTTTGTTCCCTTGTAGGTTCTCTAACGgtatgtctcattatgtagtcattgatgactttctaatagtatttgtctccccttgttattttcccccctgtatttgtattgtaaggttttcctttgacag

Basic information

species Glycine max
transcript GLYMA12G28940.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G28940.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv12s0035g00720.t01 (Vitis vinifera), 5'ss of exon 5
AACAGCTACTTTTATCCTTATCTTCCACTTCATTCCTCTCTATGGCCAGACACACATAATGGTTTATATCGGTGTTTGTTCCCTTGTAGGTTCTCTAACGgtatgtctcattatgtagtcattgatgactttctaatagtatttgtctccccttgttattttcccccctgtatttgtattgtaaggttttcctttgacag
|||||||   ||| | |||||  |||||||||| || |  ||||||||||| || ||||||||||| || || ||||| || |||||||||||  || ||||  || |    || | ||  ||  | ||||  | |      ||||   |  || ||| ||         | ||||| |||   |  |   || ||||||
AACAGCTGTGTTTGTACTTATAATCCACTTCATCCCACAATATGGCCAGACCCATATAATGGTTTACATTGGAGTTTGCTCTCTTGTAGGTTCCTTATCGgtgcgtattggcatttggtagtttctcacttcttgaa-----ttgtgctctgtttttacttctagagtgttgtttgtcttgatggaat--gctctgacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208319784|gb|GE116829.1|GE116829
EST:     TTGTAGGTTCTCTAACG                         GTTATGAGTGTTAAGGCTCTTGGAATTGTCATAAAGTTAACACTGTCGGGG
genomic: TTGTAGGTTCTCTAACGgtatgtctca ... cctttgacagGTTATGAGTGTTAAGGCTCTTGGAATTGTCATAAAGTTAACACTGTCGGGG
EST: gi|208147788|gb|GD951041.1|GD951041
EST:     CACACATAATGGTTTATATCGGTGTTTGTTCCCTTGTAGGTTCTCTAACG                         GTTATGAGTGTTAAGGCTCTTGGAATTGTCATAAAGTTAACACTGTCGGGG
genomic: CACACATAATGGTTTATATCGGTGTTTGTTCCCTTGTAGGTTCTCTAACGgtatgtctca ... cctttgacagGTTATGAGTGTTAAGGCTCTTGGAATTGTCATAAAGTTAACACTGTCGGGG
EST: gi|10236233|gb|BE805121.1|BE805121
EST:     CACACATAATGGTTTATATCGGTGTTTGTTCCCTTGTAGGTTCTCTAACG                         GTTATGAGTGTTAAGGCTCTTGGAATTGTCATAAAGTTAACACTGTCGGGG
genomic: CACACATAATGGTTTATATCGGTGTTTGTTCCCTTGTAGGTTCTCTAACGgtatgtctca ... cctttgacagGTTATGAGTGTTAAGGCTCTTGGAATTGTCATAAAGTTAACACTGTCGGGG