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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTTGAATATGTTCCTGAAACTGTGAATCGCATTGCGAGGAGCTATAGCAGGATTAACCAGCGAATGCCTTTAATATATGTAAAGCTTTATACCTACCAGgtatgtaattgcttgcttctcagttagatctggaaattcatagcaagaggcaatcccagagtatttaaataacctacatttattacggtgtcaataataa...

Basic information

species Glycine max
transcript GLYMA12G28730.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G28730.2 (Glycine max), 5'ss of exon 5
lower sequence: Vv12s0035g01060.t01 (Vitis vinifera), 5'ss of exon 4
ACTTGAATATGTTCCTGAAACTGTGAATCGCATTGCGAGGAGCTATAGCAGGATTAACCAGCGAATGCCTTTAATATATGTAAAGCTTTATACCTACCAGgtatgtaattgcttgcttctcagttagatctggaaattcatagcaagaggcaatcccagagtatttaaataacctacatttattacggtgtcaataataa-----
|||||||| |||||| || ||||| ||||| ||||| |||| ||| |||||||| |||||||||||||| ||||||||||| || || |||||||| ||||| |||||  | ||  | |||  |   | ||     ||   | ||             ||  ||| | | ||  |||| ||     |   | | ||| |      
ACTTGAATTTGTTCCGGAGACTGTTAATCGTATTGCAAGGAACTACAGCAGGATCAACCAGCGAATGCCCTTAATATATGTGAAACTCTATACCTATCAGgtttgtaaaagttt-ttcctctatgctacctt----ttttcatcagtccttttgatttgaaaattaacacaaattacagttccattgtccttattaaaagagaaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21678169|gb|BQ630520.1|BQ630520
EST:     GGATTAACCAGCGAATGCCTTTAATATATGTAAAGCTTTATACCTACCAG                         ATTTGCAGGGCCCTTGCTTATATACATAACTGCATTGGTATATGTCATCGT
genomic: GGATTAACCAGCGAATGCCTTTAATATATGTAAAGCTTTATACCTACCAGgtatgtaatt ... ttggctgcagATTTGCAGGGCCCTTGCTTATATACATAACTGCATTGGTATATGTCATCGT
EST: gi|151408852|gb|EV278660.1|EV278660
EST:     GGATTAACCAGCGAATGCCTTTAATATATGTAAAGCTTTATACCTACCAG                         ATTTGCAGGGCCCTTGCTTATATACATAACTGCATTGGTATATGTCATCGT
genomic: GGATTAACCAGCGAATGCCTTTAATATATGTAAAGCTTTATACCTACCAGgtatgtaatt ... ttggctgcagATTTGCAGGGCCCTTGCTTATATACATAACTGCATTGGTATATGTCATCGT
EST: gi|151408377|gb|EV278185.1|EV278185
EST:     GGATTAACCAGCGAATGCCTTTAATATATGTAAAGCTTTATACCTACCAG                         ATTTGCAGGGCCCTTGCTTATATACATAACTGCATTGGTATATGTCATCGT
genomic: GGATTAACCAGCGAATGCCTTTAATATATGTAAAGCTTTATACCTACCAGgtatgtaatt ... ttggctgcagATTTGCAGGGCCCTTGCTTATATACATAACTGCATTGGTATATGTCATCGT
EST: gi|192295002|gb|FG986721.1|FG986721
EST:     GGATTAACCAGCGAATGCCTTTAATATATGTAAAGCTTTATACCTACCAG                         ATTTGCAGGGCCCTTGCTTATATACATAACTGCATTGGTATATGTCATCGT
genomic: GGATTAACCAGCGAATGCCTTTAATATATGTAAAGCTTTATACCTACCAGgtatgtaatt ... ttggctgcagATTTGCAGGGCCCTTGCTTATATACATAACTGCATTGGTATATGTCATCGT
EST: gi|37995772|gb|CF807361.1|CF807361
EST:     GGATTAACCAGCGAATGCCTTTAATATATGTAAAGCTTTATACCTACCAG                         ATTTGCAGGGCCCTTGCTTATATACATAACTGCATTGGTATATGTCATCGT
genomic: GGATTAACCAGCGAATGCCTTTAATATATGTAAAGCTTTATACCTACCAGgtatgtaatt ... ttggctgcagATTTGCAGGGCCCTTGCTTATATACATAACTGCATTGGTATATGTCATCGT