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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTTAACATGGGGGGCCGCCCAGGTCAAGGTGTTTGCAAACGATTGTTTGAGCGTCGAGGTTTTCGCATTACAAAGCTTTGGCAAACTAAAATCATTCAGgttagtaaccatatgttcgactagatgtgatttctacaatggtcgtattatcttactgagatgtattggtacag

Basic information

species Glycine max
transcript GLYMA12G28490.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G28490.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv12s0035g01920.t01 (Vitis vinifera), 5'ss of exon 6
---------CTTTAACATGGGGGGCCGCCCAGGTCAAGGTGTTTGCAAACGATTGTTTGAGCGTCGAGGTTTTCGCATTACAAAGCTTTGGCAAACTAAAATCATTCAGgttagtaaccatatgttcgactagatgtgatttctacaatggtcgtattatcttactgagatgtattggtacag
         ||| || ||||| || || ||||| ||||||||||| ||||| ||||||||||| || ||||| ||  |||| | ||||||||| || ||| | |||||||  ||||| | | | ||  | |  |  | || ||| ||       |  | || |  ||| ||   ||  |||||
CATTATGATCTTCAATATGGGAGGTCGACCAGGACAAGGTGTTTGTAAACGCTTGTTTGAGCGCCGTGGTTTCCGTGTTACTAGGCTTTGGCAGACCAAAgttattcaggcgagtaaacctttcttttagtgaagattatgtctccaccaaaaatgctttcctcatgaaatt--ttattacag