Sequence
atgc intronic sequence ATGC exonic sequenceTACTCTTCGTCTTTATGGGGGTGCTGCATTTGAGAGGGTGATGCATGAGTTTCGCTGTGCTGCATATTCCATAGAATGCCCCTCAGTGTCAAGAGAGAAGgtgatttacttttcataaactcatgcgaggaacattttattttttcattcaagtaatcaagtttcaacttcaaattcttgagtatctatttaacag
Basic information
species | Glycine max |
transcript | GLYMA12G23480.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA12G23480.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G010306_T01 (Zea mays), 5'ss of exon 5
TACTCTTCGTCTTTATGGGGGTGCTGCATTTGAGAGGGTGATGCATGAGTTTCGCTGTGCTGCATATTCCATAGAATGCCCCTCAGTGTCAAGAGAGAAGgtgatttacttttcataaactcatgcgaggaacattttattttttcattcaagtaatcaagtttcaacttcaaattcttgagtatctatttaacag
| ||| || ||||| ||||| || |||||||| || |||||||| ||||||||||| ||||||| || |||||||| ||||||||| |||||||| ||| |||| || | | ||| ||||||| || ||| | || | | | | | |
CAGCCTTAAGCTGTATGGTGGTGCAGCTTTTGAGAGAGTAATGCATGAATTTCGCTGTGCAACATATTCAATGGAATGCCCTCAAGTGTCAAGGGAGAAGgt-----actcttca--gcctggaaccatttacacacaattttttgg---gagaaattac-ttatatccttatgtcactag---------------
upper sequence: GLYMA12G23480.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G063737_T01 (Zea mays), 5'ss of exon 5
TACTCTTCGTCTTTATGGGGGTGCTGCATTTGAGAGGGTGATGCATGAGTTTCGCTGTGCTGCATATTCCATAGAATGCCCCTCAGTGTCAAGAGAGAAGgtgatttacttttcataaactcatgcgaggaacattttattttttcattcaagtaatcaagtttcaacttcaaattcttgagtatctatttaacag
| ||| || ||||| ||||| || |||||||| || |||||||| ||||||||||| | ||||| | |||||||| ||||||||| |||||||| ||| || || || ||| | ||| ||| ||| ||| | | |||| || |
CAGCCTTAAGCTGTATGGTGGTGCAGCTTTTGAGAGAGTAATGCATGAATTTCGCTGTGCAACGTATTCATTGGAATGCCCACAAGTGTCAAGGGAGAAGgt-----actctt--tagcctgcaacgatgtacacacacaattt--attgggagaattgcttatatacttatgtcgctag----------------
upper sequence: GLYMA12G23480.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv19s0014g02500.t01 (Vitis vinifera), 5'ss of exon 6
TACTCTTCGTCTTTATGGGGGTGCTGCATTTGAGAGGGTGATGCATGAGTTTCGCTGTGCTGCATATTCCATAGAATGCCCCTCAGTGTCAAGAGAGAAGgtg-atttacttttcata-aactcatgcgaggaacattttattttttcattcaag-----taatcaagtttcaacttc-aaattcttgagtatctatttaacag
||| ||| | || ||||| || ||||| ||||| || ||||| ||||| ||||| ||||||||||||||||| |||||||| |||| ||||| |||||||| ||| ||| | ||| || | | | |||| ||| ||| | | | || | | | |||| | ||| | || || | |||||
TACCCTTAGACTCTATGGAGGAGCTGCTTTTGAAAGAGTGATACATGAATTTCGTTGTGCTGCATATTCCATTGAATGCCCACCAGTATCAAGGGAGAAGgtatattaactgtacatgcaatttacacttggaattcaaagtttcagcatccttgattgttcataagctgtgaactgctaaaatatttgacattggtggaacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|18735271|gb|BM528668.1|BM528668EST: TTCGCTGTGCTGCATATTCCATAGAATGCCCCTCAGTGTCAAGAGAGAAG GTTGCAAATATATTACTTGCTCATGCTGGCCGAG
genomic: TTCGCTGTGCTGCATATTCCATAGAATGCCCCTCAGTGTCAAGAGAGAAGgtgatttact ... tatttaacagGTTGCAAATATATTACTTGCTCATGCTGGCCGAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TACTCTTCGTCTTTATGGGGGTGCTGCATTTGAGAGGGTGATGCATGAGTTTCGCTGTGCTGCATATTCCATAGAATGCCCCTCAGTGTCAAGAGAGAAGgtgatttacttttcataaactcatgcgaggaacattttattttttcattcaagtaatcaagtttcaacttcaaattcttgagtatctatttaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA