1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TCTTTGTAGATCTATTGGGCAAATGGAAGGAGTCTGAATATGGAGGTGGTCAGTCTGTTCCTGTTGGTGGTATTGCATACTACATCACTGCACCTTCCAGgtaagagaagtgttccccattgtatggtttatggtttgcttcaataaaattatatttttaccatcccttgttattattctagttcaattttcattttagaactttttttttttttgcag
species | Glycine max |
transcript | GLYMA12G17950.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CAGTCTGTTCCTGTTGGTGGTATTGCATACTACATCACTGCACCTTCCAG CTTAGCTGATATGGCAGCCAATCCTTTCCATGCATTATTCTACCTTGTGTTEST: gi|193679263|gb|FK619277.1|FK619277
genomic: CAGTCTGTTCCTGTTGGTGGTATTGCATACTACATCACTGCACCTTCCAGgtaagagaag ... ttttttgcagCTTAGCTGATATGGCAGCCAATCCTTTCCATGCGTTATTCTACCTTGTGTT
EST: CAGTCTGTTCCTGTTGGTGGTATTGCATACTACATCACTGCACCTTCCAG CTTAGCTGATATGGCAGCCAATCCTTTCCATGCGTTATTCTACCTTGTGTTEST: gi|18041345|gb|BM309639.1|BM309639
genomic: CAGTCTGTTCCTGTTGGTGGTATTGCATACTACATCACTGCACCTTCCAGgtaagagaag ... ttttttgcagCTTAGCTGATATGGCAGCCAATCCTTTCCATGCGTTATTCTACCTTGTGTT
EST: CAGTCTGTTCCTGTTGGTGGTATTGCATACTACATCACTGCACCTTCCAG CTTAGCTGATATGGCAGCCAATCCTEST: gi|20812894|gb|BQ297372.1|BQ297372
genomic: CAGTCTGTTCCTGTTGGTGGTATTGCATACTACATCACTGCACCTTCCAGgtaagagaag ... ttttttgcagCTTAGCTGATATGGCAGCCAATCCT
EST: CAGTCTGTTCCTGTTGGTGGTATTGCATACTACATCACTGCACCTTCCAG CTTAGCTGATATGGCAGCCAATCCTTTCCATGCGTTATTCTACCTTGTGTTEST: gi|17519265|gb|BM188307.1|BM188307
genomic: CAGTCTGTTCCTGTTGGTGGTATTGCATACTACATCACTGCACCTTCCAGgtaagagaag ... ttttttgcagCTTAGCTGATATGGCAGCCAATCCTTTCCATGCGTTATTCTACCTTGTGTT
EST: CAGTCTGTTCCTGTTGGTGGTATTGCATACTACATCACTGCACCTTCCAG CTTAGCTGATATGGCAGCCAATCCTTTCCATGCATTATTCTACCTTGTGTTEST: gi|9900546|gb|BE609514.1|BE609514
genomic: CAGTCTGTTCCTGTTGGTGGTATTGCATACTACATCACTGCACCTTCCAGgtaagagaag ... ttttttgcagCTTAGCTGATATGGCAGCCAATCCTTTCCATGCGTTATTCTACCTTGTGTT
EST: CAGTCTGTTCCTGTTGGTGGTATTGCATACTACATCACTGCACCTTCCAG CTTAGCTGATATGGCAGCCAATCCTTTCCATGCGTTATTCTACCTTGTGTTEST: gi|5342399|gb|AI794683.1|AI794683
genomic: CAGTCTGTTCCTGTTGGTGGTATTGCATACTACATCACTGCACCTTCCAGgtaagagaag ... ttttttgcagCTTAGCTGATATGGCAGCCAATCCTTTCCATGCGTTATTCTACCTTGTGTT
EST: CAGTCTGTTCCTGTTGGTGGTATTGCATACTACATCACTGCACCTTCCAG CTTAGCTGATATGGCAGCCAATCCTTTCCATGCGTTATTCTACCTTGTGTTEST: gi|5126396|gb|AI748132.1|AI748132
genomic: CAGTCTGTTCCTGTTGGTGGTATTGCATACTACATCACTGCACCTTCCAGgtaagagaag ... ttttttgcagCTTAGCTGATATGGCAGCCAATCCTTTCCATGCGTTATTCTACCTTGTGTT
EST: CAGTCTGTTCCTGTTGGTGGTATTGCATACTACATCACTGCACCTTCCAG CTTAGCTGATATGGCAGCCAATCCTTTCCATGCGTTATTCTACCTTGTGTTEST: gi|208076658|gb|GD875587.1|GD875587
genomic: CAGTCTGTTCCTGTTGGTGGTATTGCATACTACATCACTGCACCTTCCAGgtaagagaag ... ttttttgcagCTTAGCTGATATGGCAGCCAATCCTTTCCATGCGTTATTCTACCTTGTGTT
EST: CAGTCTGTTCCTGTTGGTGGTATTGCATACTACATCACTGCACCTTCCAG CTTAGCTGATATGGCAGCCAATCC
genomic: CAGTCTGTTCCTGTTGGTGGTATTGCATACTACATCACTGCACCTTCCAGgtaagagaag ... ttttttgcagCTTAGCTGATATGGCAGCCAATCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTTTGTAGATCTATTGGGCAAATGGAAGGAGTCTGAATATGGAGGTGGTCAGTCTGTTCCTGTTGGTGGTATTGCATACTACATCACTGCACCTTCCAGgtaagagaagtgttccccattgtatggtttatggtttgcttcaataaaattatatttttaccatcccttgttattattctagttcaattttcattttagaactttttttttttttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG