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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAGTTCCTCCTGTAATCCATCGAGATATCAAATCTTCCAACATTCTGTTGGATCAATCCATGCTAGCCAGGgtatgtccttgttactcgtccatcatctttatcacgaaaagtagctagcaataaatactcacactatacattagtttattttggtgaatgtcacaatacattactgttgtcatagtcatttgttgctgttaggatgcttcttaatctttaggtgataatgttggatcaatcag

Basic information

species Glycine max
transcript GLYMA12G16650.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G16650.1 (Glycine max), 5'ss of exon 5
lower sequence: AT5G54590.2 (Arabidopsis thaliana), 5'ss of exon 5
GCAGTTCCTCCTGTAATCCATCGAGATATCAAATCTTCCAACATTCTGTTGGATCAATCCATGCTAGCCAGGgtatgtccttgttactcgtccatcatctttatcacgaaaagtagctagcaataaatactcacactatacattagtttattttggtgaatgtcacaatacattactgttgtcatagtcatttgttgctgttaggatgcttcttaatctttaggtgataatgttggatcaatcag
|| |||||||||||||||||  ||||||||||||||||||||||  || |||||||||| |||  |||  |||||      | ||  |  ||  | |  | |  ||    |   | | | |   |  | || |   |  |  ||  || | ||  |                                                                                         
GCTGTTCCTCCTGTAATCCACAGAGATATCAAATCTTCCAACATCTTGCTGGATCAATCTATGAGAGCTCGGgtaaacatatcttctttctctttgaaatct--cagtctattgaaccacctcaagtttctaatggtg-atcttctttaacttcag-----------------------------------------------------------------------------------------

upper sequence: GLYMA12G16650.1 (Glycine max), 5'ss of exon 5
lower sequence: AT5G54590.1 (Arabidopsis thaliana), 5'ss of exon 5
----------------------------GCAGTTCCTCCTGTAATCCATCGAGATATCAAATCTTCCAACATTCTGTTGGATCAATCCATGCTAGCCAGGgtatgtccttgttactcgtccatcatctttatcacgaaaagtagctagcaataaatactcacactatacattagtttattttggtgaatgtcacaatacattactgttgtcatagtcatttgttgctgttaggatgcttcttaatctttaggtgataatgttggatcaatcag
                            || |||||||||||||||||  ||||||||||||||||||||||  || |||||||||| |||  |||  |||||      | ||  |  ||  | |  | |  ||    |   | | | |   |  | || |   |  |  ||  || | ||  |                                                                                         
AAACTCATGTTCTAATCAATTGTTCCAGGCTGTTCCTCCTGTAATCCACAGAGATATCAAATCTTCCAACATCTTGCTGGATCAATCTATGAGAGCTCGGgtaaacatatcttctttctctttgaaatct--cagtctattgaaccacctcaagtttctaatggtg-atcttctttaacttcag-----------------------------------------------------------------------------------------