Sequence
atgc intronic sequence ATGC exonic sequenceCATACGAAAAGGCTACTGCTTCTCAAGACTTGATGGCTCCACTCCAACTAATTTACGTCAATCTCTGGTTGATGATTTCAACTCAAGTCCAAGCAAACAAgtatatctcaaacctaatagttgattaagcatttttccaattcaatttgtgattgggggcttgtttattattttag
Basic information
species | Glycine max |
transcript | GLYMA12G13180.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA12G13180.1 (Glycine max), 5'ss of exon 5
lower sequence: AT1G03750.1 (Arabidopsis thaliana), 5'ss of exon 4
CATACGAAAAGGCTACTGCTTCTCAAGACTTGATGGCTCCACTCCAACTAATTTACGTCAATCTCTGGTTGATGATTTCAACTCAAGTCCAAGCAAACAAgtatatctcaaacctaatagtt--gattaag--catttttccaatt--caatttgtgattgggggcttgtttattattttag-------
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AATTAGAAAAGGTTATAGCTTTGCTAGACTTGATGGTTCTACTCCAACTAATCTGCGACAGTCTCTTGTGGATGATTTCAATGCGAGTCCTAGCAAACAGgtttttattaaccgaacccttttcgatagagatcatgtttcttcttacctacttctgatctgatgattaaatgagcttttatgtgtcag
upper sequence: GLYMA12G13180.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv12s0028g03440.t01 (Vitis vinifera), 5'ss of exon 5
CATACGAAAAGGCTACTGCTTCTCAAGACTTGATGGCTCCACTCCAACTAATTTACGTCAATCTCTGGTTGATGATTTCAACTCAAGTCCAAGCAAACAAgtatatctcaaacctaatagttgattaagcatt--tttccaattcaatttgtgattgggggcttgtttattattttag
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TATACGCAAAGGTTATTGCTTCTCAAGACTTGATGGTTCCACTCCAACCAACTTGCGTCAATCTCTTGTTGATGACTTCAACTCAAGTCCAAGCAAGCAAgtaaatattcatatcagaaattgattaggaagaaacttatgattcaattttctgttgggc-ctaatttcttgtttcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|17023333|gb|BM094367.1|BM094367EST: GATGATTTCAACTCAAGTCCAAGCAAACAA GTATTCCTAATATCAACTCGTGCGGGTGGGCTTGGATTGAACCTTGTCAGT
genomic: GATGATTTCAACTCAAGTCCAAGCAAACAAgtatatctca ... attattttagGTATTCCTAATATCAACTCGTGCGGGTGGGCTTGGATTGAACCTTGTCAGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
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CATACGAAAAGGCTACTGCTTCTCAAGACTTGATGGCTCCACTCCAACTAATTTACGTCAATCTCTGGTTGATGATTTCAACTCAAGTCCAAGCAAACAAgtatatctcaaacctaatagttgattaagcatttttccaattcaatttgtgattgggggcttgtttattattttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA