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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGACTGTTGGTCAGTTTGTGTATGTGGTGCGGAAGAGAATCAAGCTGAGTCCTGAGAAGGCGATCTTCATTTTTGTTAAGAATATTTTACCACCAACTGgtaacaaagaacaaacataattgtatgtggaatattattgttcttatggttaattttgtgaagtgagctgtgattttctgtttatgcag

Basic information

species Glycine max
transcript GLYMA12G10510.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G10510.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os07g32800.1 (Oryza sativa), 5'ss of exon 5
TTGACTGTTGGTCAGTTTGTGTATGTGGTGCGGAAGAGAATCAAGCTGAGTCCTGAGAAGGCGATCTTCATTTTTGTTAAGAATATTTTACCACCAACTGgtaacaaagaacaaacataatt-gtatgtggaatattat-tgttcttatggttaattttgtgaagtgagctgtgattttctgtttatgcag
 | |||||||| |||||||| |||||||| |||||||| || ||||| || || || ||||| |||||  | ||||| ||||| |  || || ||||||||||| |   |     | | ||| ||   ||  |||| |  |   ||| |||||   |   |  | |  ||    |  |||| ||   ||||
CTTACTGTTGGCCAGTTTGTCTATGTGGTTCGGAAGAGGATTAAGCTTAGCCCAGAAAAGGCCATCTTTGTCTTTGTGAAGAACACATTGCCGCCAACTGgtaa-attcattgttcttgatttgtcattgtcatatcacctacccttttggtt---tccttatattttgcgcatacattctattg--gcag

upper sequence: GLYMA12G10510.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv12s0059g00660.t01 (Vitis vinifera), 5'ss of exon 5
TTGACTGTTGGTCAGTTTGTGTATGTGGTGCGGAAGAGAATCAAGCTGAGTCCTGAGAAGGCGATCTTCATTTTTGTTAAGAATATTTTACCACCAACTGgtaacaaagaa-caaacataattgtatgtggaa-tattattgt-------tcttatggttaattttgtgaagtgagctgtgat-tttctgtttatgcag
 |||||||||| |||||||| ||||| || |||||||| || ||||| | ||||||||||||||| ||||||||| | ||||| ||| | || ||||||||| | | | || | |   | |   | | | ||| | || || |       ||| |  | ||| |||| | | | |   ||||  ||||||||  |  ||
CTGACTGTTGGCCAGTTTGTTTATGTTGTCCGGAAGAGGATTAAGCTCACTCCTGAGAAGGCGATATTCATTTTTATCAAGAACATTCTGCCGCCAACTGgtgagataaaatccattttcaccctgtattgaagttttgttctaacattgtctgaatgctaagtttg-gtacttatgggtgacgtttctgttgttttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15202313|gb|BI425336.1|BI425336
EST:     TCCTGAGAAGGCGATCTTCATTTTTGTTAAGAATATTTTACCACCAACTG                         CGGCAATGATGTCTGCAATTTATGAGGAAAACAAGGATGAAGATGGCTTTC
genomic: TCCTGAGAAGGCGATCTTCATTTTTGTTAAGAATATTTTACCACCAACTGgtaacaaaga ... gtttatgcagCGGCAATGATGTCTGCAATTTATGAGGAAAACAAGGATGAAGATGGCTTTC
EST: gi|209704750|gb|BW676067.1|BW676067
EST:     TCCTGAGAAGGCGATCTTCATTTTTGTTAAGAATATTTTACCACCAACTG                         CGGCAATGATGTCTGCAATTTATGAGGAAAACAAGGATGAAGATGGCTTTC
genomic: TCCTGAGAAGGCGATCTTCATTTTTGTTAAGAATATTTTACCACCAACTGgtaacaaaga ... gtttatgcagCGGCAATGATGTCTGCAATTTATGAGGAAAACAAGGATGAAGATGGCTTTC
EST: gi|209696942|gb|BW660507.1|BW660507
EST:     TCCTGAGAAGGCGATCTTCATTTTTGTTAAGAATATTTTACCACCAACTG                         CGGCAATGATGTCTGCAATTTATGAGGAAAACAAGGATGAAGATGGCTTTC
genomic: TCCTGAGAAGGCGATCTTCATTTTTGTTAAGAATATTTTACCACCAACTGgtaacaaaga ... gtttatgcagCGGCAATGATGTCTGCAATTTATGAGGAAAACAAGGATGAAGATGGCTTTC
EST: gi|18040023|gb|BM308317.1|BM308317
EST:     TCCTGAGAAGGCGATCTTCATTTTTGTTAAGAATATTTTACCACCAACTG                         CGGCAATGATGTCTGCAATTTATGAGGAAAACAAGGATGAAGATGGCTTTC
genomic: TCCTGAGAAGGCGATCTTCATTTTTGTTAAGAATATTTTACCACCAACTGgtaacaaaga ... gtttatgcagCGGCAATGATGTCTGCAATTTATGAGGAAAACAAGGATGAAGATGGCTTTC
EST: gi|23730734|gb|BU763465.1|BU763465
EST:     TCCTGAGAAGGCGATCTTCATTTTTGTTAAGAATATTTTACCACCAACTG                         CGGCAATGATGTCTGCAATTTATGAGGAAAACAAGGATGAAGATGGCTTTC
genomic: TCCTGAGAAGGCGATCTTCATTTTTGTTAAGAATATTTTACCACCAACTGgtaacaaaga ... gtttatgcagCGGCAATGATGTCTGCAATTTATGAGGAAAACAAGGATGAAGATGGCTTTC
EST: gi|254337996|gb|GR845459.1|GR845459
EST:     TCCTGAGAAGGCGATCTTCATTTTTGTTAAGAATATTTTACCACCAACTG                         CGGCAATGATGTCTGCAATTTATGAGGAAAACAAGGATGAAGATGGCTTTC
genomic: TCCTGAGAAGGCGATCTTCATTTTTGTTAAGAATATTTTACCACCAACTGgtaacaaaga ... gtttatgcagCGGCAATGATGTCTGCAATTTATGAGGAAAACAAGGATGAAGATGGCTTTC
EST: gi|58017380|gb|CX704122.1|CX704122
EST:     TCCTGAGAAGGCGATCTTCATTTTTGTTAAGAATATTTTACCACCAACTG                         CGGCAATGATGTCTGCAATTTATGAGGAAAACAAGGATGAAGATGGCTTTC
genomic: TCCTGAGAAGGCGATCTTCATTTTTGTTAAGAATATTTTACCACCAACTGgtaacaaaga ... gtttatgcagCGGCAATGATGTCTGCAATTTATGAGGAAAACAAGGATGAAGATGGCTTTC
EST: gi|151405049|gb|EV274863.1|EV274863
EST:     TCCTGAGAAGGCGATCTTCATTTTTGTTAAGAATATTTTACCACCAACTG                         CGGCAATGATGTCTGCAATTTATGAGGAAAACAAGGATGAAGATGGCTTTC
genomic: TCCTGAGAAGGCGATCTTCATTTTTGTTAAGAATATTTTACCACCAACTGgtaacaaaga ... gtttatgcagCGGCAATGATGTCTGCAATTTATGAGGAAAACAAGGATGAAGATGGCTTTC
EST: gi|213601006|gb|DB983681.1|DB983681
EST:     TCCTGAGAAGGCGATCTTCATTTTTGTTAAGAATATTTTACCACCAACTG                         CGGCAATGATGTCTGCAATTTATGAGGAAAACAAGGATGAAGATGGCTTTC
genomic: TCCTGAGAAGGCGATCTTCATTTTTGTTAAGAATATTTTACCACCAACTGgtaacaaaga ... gtttatgcagCGGCAATGATGTCTGCAATTTATGAGGAAAACAAGGATGAAGATGGCTTTC