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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTATCCTAAGGACTCCGATAAGGTTATGCTTGCAAAACAAACTGGGCTTACTCGGAGCCAGgtatatttcattccatatatacctttaagggtgacactaatatgctatatttgcacatcaatttgaaagtccattttcgaatggatctcattgaggaaga...

Basic information

species Glycine max
transcript GLYMA12G10030.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G10030.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv06s0009g00410.t01 (Vitis vinifera), 5'ss of exon 4
CTATCCTAAGGACTCCGATAAGGTTATGCTTGCAAAACAAACTGGGCTTACTCGGAGCCAGgtatatttcattccata-------tatacctttaagggtgacactaatatgctatatttgcacatcaatttgaaagtcc--attttcgaatggatctcattgaggaaga------------------------------------------------------------------------
|||||||||||| ||||| ||    |||||||| |||||||| ||||||||||| |||||||||||||  |||   |         || | | |    ||    ||   ||  |   ||||        |  || ||| |  |  ||| |      |   ||| |||                                                                           
CTATCCTAAGGATTCCGACAAACACATGCTTGCCAAACAAACGGGGCTTACTCGAAGCCAGgtatattgtatttactggcaatggcatgcatgtttcagttcagcttgcattatggttttgtggtgggttgggatagttctcaagttccagccttgcctgttggggagtgctactgtgtgcctgaaataatttaattggattttttactttgcaaagaaacatctaactttttgcagtgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21677523|gb|BQ629874.1|BQ629874
EST:     ACTCCGATAAGGTTATGCTTGCAAAACAAACTGGGCTTACTCGGAGCCAG                         GTATCTAACTGGTTTATAAATGCCCGAGTTCGGCTATGGAAGCCAATGGTA
genomic: ACTCCGATAAGGTTATGCTTGCAAAACAAACTGGGCTTACTCGGAGCCAGgtatatttca ... ttatatacagGTATCTAACTGGTTTATAAATGCCCGAGTTCGGCTATGGAAGCCAATGGTA