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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAATAAGGCGGCGTTTCGATAAGCGTATATACATACCCCTACCTGATTTAAAGGCTCGCCAACACATGTTCAAGgcatgggcaatatacatgatgatgttcattggtcttattgtgtattgtgaacctagcaaatggccttacaatgtctttttcttggttgataaattgaacag

Basic information

species Glycine max
transcript GLYMA12G09300.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51338581|gb|CO982447.1|CO982447
EST:     GTATATACATACCCCTACCTGATTTAAAGGCTCGCCAACACATGTTCAAG                         GTGCACCTAGGAGATACTCCCCATAACTTGGCTGAAAGTGATTTCGAACAT
genomic: GTATATACATACCCCTACCTGATTTAAAGGCTCGCCAACACATGTTCAAGgcatgggcaa ... aattgaacagGTGCACCTAGGAGATACTCCCCATAACTTGGCTGAAAGTGATTTCGAACAT
EST: gi|208248007|gb|GE048601.1|GE048601
EST:     CCCTACCTGATTTAAAGGCTCGCCAACACATGTTCAAG                         GTGCACCTAGGAGATACTCCCCATAACTTGGCTGAAAGTGATTTCGAACAT
genomic: CCCTACCTGATTTAAAGGCTCGCCAACACATGTTCAAGgcatgggcaa ... aattgaacagGTGCACCTAGGAGATACTCCCCATAACTTGGCTGAAAGTGATTTCGAACAT
EST: gi|57575390|gb|CX548365.1|CX548365
EST:     GTATATACATACCCCTACCTGATTTAAAGGCTCGCCAACACATGTTCAAG                         GTGCACCTAGGAGATACTCCCCATAACTTGGCTGAAAGTGATTTCGAACAT
genomic: GTATATACATACCCCTACCTGATTTAAAGGCTCGCCAACACATGTTCAAGgcatgggcaa ... aattgaacagGTGCACCTAGGAGATACTCCCCATAACTTGGCTGAAAGTGATTTCGAACAT
EST: gi|193360519|gb|FK328117.1|FK328117
EST:     GTATATACATACCCCTACCTGATTTAAAGGCTCGCCAACACATGTTCAAG                         GTACACCTAGGAGATACTCCCCATAACTTGGCTGAAAGT
genomic: GTATATACATACCCCTACCTGATTTAAAGGCTCGCCAACACATGTTCAAGgcatgggcaa ... aattgaacagGTGCACCTAGGAGATACTCCCCATAACTTGGCTGAAAGT
EST: gi|18721136|gb|BM523322.1|BM523322
EST:     GTATATACATACCCCTACCTGATTTAAAGGCTCGCCAACACATGTTCAAG                         GTGCACCTAGGAGATACTCCCCATAACTTGGCTGAAAGTGATTTCGAACAT
genomic: GTATATACATACCCCTACCTGATTTAAAGGCTCGCCAACACATGTTCAAGgcatgggcaa ... aattgaacagGTGCACCTAGGAGATACTCCCCATAACTTGGCTGAAAGTGATTTCGAACAT
EST: gi|58014504|gb|CX701246.1|CX701246
EST:     GTATATACATACCCCTACCTGATTTAAAGGCTCGCCAACACATGTTCAAG                         GTGCACCTAGGAGATACTCCCCATAACTTGGCTGAAAGTGATTTCGAACAT
genomic: GTATATACATACCCCTACCTGATTTAAAGGCTCGCCAACACATGTTCAAGgcatgggcaa ... aattgaacagGTGCACCTAGGAGATACTCCCCATAACTTGGCTGAAAGTGATTTCGAACAT
EST: gi|58023445|gb|CX710186.1|CX710186
EST:     GTATATACATACCCCTACCTGATTTAAAGGCTCGCCAACACATGTTCAAG                         GTGCACCTAGGAGATACTCCCCATAACTTGGCTGAAAGTGATTTCGAACAT
genomic: GTATATACATACCCCTACCTGATTTAAAGGCTCGCCAACACATGTTCAAGgcatgggcaa ... aattgaacagGTGCACCTAGGAGATACTCCCCATAACTTGGCTGAAAGTGATTTCGAACAT
EST: gi|13252419|gb|BG363322.1|BG363322
EST:     GTATATACATACCCCTACCTGATTTAAAGGCTCGCCAACACATGTTCAAG                         GTGCACCTAGGAGATACTCCCCATAACTTGGCTGAAAGTGATTTCGAACAT
genomic: GTATATACATACCCCTACCTGATTTAAAGGCTCGCCAACACATGTTCAAGgcatgggcaa ... aattgaacagGTGCACCTAGGAGATACTCCCCATAACTTGGCTGAAAGTGATTTCGAACAT