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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTAGAGCAAGGGAAGCTGGGGAGATAAATAAAAGCTTGCTTACACTTGGTCGAGTGATTAATGCTTTAGTTGATCATTCAGGTCATGTGCCATATAGgtatgaatggctaccgttctcctggttatggtaacttttgattctactttcaaacctagagaaaaatgcttttgtattattaagatgtcccgttatgtcag

Basic information

species Glycine max
transcript GLYMA12G07910.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G07910.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os05g02670.2 (Oryza sativa), 5'ss of exon 7
GGTAGAGCAAGGGAAGCTGGGGAGATAAATAAAAGCTTGCTTACACTTGGTCGAGTGATTAATGCTTTAGTTGATCATTCAGGTCATGTGCCATATAGgtatgaatggctaccgttctcctggttatggtaacttttgattctactttcaaacctagagaaaaatgcttttgtattattaagatgtcccgttatgtcag
|| ||||| || || ||||||||||| || || |||||||| |||||||||||||| || |||||| | ||||| || || || ||||| ||||| |||||    |    || ||  ||||||      | | | | ||  | | |||   |  | |  ||   || || | | ||  |      |    || |  |||
GGCAGAGCGAGAGAGGCTGGGGAGATCAACAAGAGCTTGCTGACACTTGGTCGAGTCATCAATGCTCTTGTTGAACACTCTGGACATGTCCCATACAGgtaattctaaggacagtg-tcctggcagatttgattctagaaac-attttggcattttgccaagggtgtttatatgttgctc---catttaattgttccag

upper sequence: GLYMA12G07910.1 (Glycine max), 5'ss of exon 5
lower sequence: AT2G28620.1 (Arabidopsis thaliana), 5'ss of exon 5
GGTAGAGCAAGGGAAGCTGGGGAGATAAATAAAAGCTTGCTTACACTTGGTCGAGTGATTAATGCTTTAGTTGATCATTCAGGTCATGTGCCATATAGgtat--gaatg-----gctaccgttctcctggttatggtaacttttgattctactttcaa-acctagagaaaaatgcttttgtattattaagatgtcccgttatgtcag
|||||||| ||||||||||| ||||| || ||||| ||||| |||||||| || || || |||||||| ||||| || || |||||  | |||||||||||   ||| |     ||   |  | ||    |   || || ||||||  | |  |  ||    |  |   |  || || |  |  ||| | || ||            
GGTAGAGCCAGGGAAGCTGGTGAGATCAACAAAAGTTTGCTCACACTTGGACGTGTCATAAATGCTTTGGTTGAACACTCTGGTCACATTCCATATAGgtaacagaaagattctgccttcaatatctctctctcgggaagttttgagacaagatctaatgtttctaaccatgtgattatacac-atttaaatttcag----------

upper sequence: GLYMA12G07910.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv06s0004g03810.t01 (Vitis vinifera), 5'ss of exon 6
GGTAGAGCAAGGGAAGCTGGGGAGATAAATAAAAGCTTGCTTACACTTGGTCGAGTGATTAATGCTTTAGTTGATCATTCAGGTCATGTGCCATATAGgtatgaatggc-tacc--gttctcctggttatggt-aacttttgat-tctactttcaaacctagagaaaaatgcttttgtattattaagatgtcccgttatgtcag
|| ||||||||||||||||||||||||||||||||||||||||| ||||| || || ||||||||  | ||||| || || |||||||| |||||||||||||||  || ||    ||||      ||||  |   | | |||  | |  |||  ||| |||| |   | |       ||||  |||||  || |  || ||||
GGCAGAGCAAGGGAAGCTGGGGAGATAAATAAAAGCTTGCTTACTCTTGGGCGTGTTATTAATGCGCTGGTTGAGCACTCTGGTCATGTTCCATATAGgtatgaactgcataattagttcagtaaattattattggcatatgaggtttgattttgaacttagaaattgaggtgaggtaattaaaaagattgcctgaaatatcag