1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CCTCGCCAACCTTTAGCTCAAGTCTTCCCCCATGTTCATCCCGCAGCCATTGATCTTGTTGATAAAATGCTGACAGTTGATCCCACCAAAAGAATTACAGgtacttttcccattcttttatgtttctgtagatagataaagcaacattcggtttcactttgaacattgatgatatctgcattagcatcagtaaagctacacaaagaatagatttgggcaaattttcatttctattttgtttaaatattggcag
species | Glycine max |
transcript | GLYMA12G07770.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TGATCTTGTTGATAAAATGCTGACAGTTGATCCCACCAAAAGAATTACAG TTGAAGAAGCACTAGCCCATCCATACCTTGAAAAACTGCATGATGTAGCTGEST: gi|7591205|gb|AW706943.1|AW706943
genomic: TGATCTTGTTGATAAAATGCTGACAGTTGATCCCACCAAAAGAATTACAGgtacttttcc ... atattggcagTTGAAGAAGCACTAGCCCATCCATACCTTGAAAAACTGCATGATGTAGCTG
EST: GCTGACAGTTGATCCCACCAAAAGAATTACAG TTGAAGAANCACTAGCCCATCCATACCTTGAAAAACTGCATGATGTAGCTGEST: gi|16105043|gb|BI892783.1|BI892783
genomic: GCTGACAGTTGATCCCACCAAAAGAATTACAGgtacttttcc ... atattggcagTTGAAGAAGCACTAGCCCATCCATACCTTGAAAAACTGCATGATGTAGCTG
EST: GATCTTGTTGAATAAA-TGCTGACAGTTGATCCCACCAAAAGAATTACAG TTGAAGAAGCA
genomic: GATCTTGTTGA-TAAAATGCTGACAGTTGATCCCACCAAAAGAATTACAGgtacttttcc ... atattggcagTTGAAGAAGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCTCGCCAACCTTTAGCTCAAGTCTTCCCCCATGTTCATCCCGCAGCCATTGATCTTGTTGATAAAATGCTGACAGTTGATCCCACCAAAAGAATTACAGgtacttttcccattcttttatgtttctgtagatagataaagcaacattcggtttcactttgaacattgatgatatctgcattagcatcagtaaagctacacaaagaatagatttgggcaaattttcatttctattttgtttaaatattggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA