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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTCTTTATCGAAGCTCTGTTGATGACAAGCATTATGCAATTAAGgttaggaaactttttggtgggcagacagattactgtaggaaacatggccacatgggcatggttttttgatacagggcttttatgttctaatagttatcaagaatagtgcatttcgtcatttattgagctgaaaatcttttgaattgaag

Basic information

species Glycine max
transcript GLYMA12G07340.3
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G07340.1 (Glycine max), 5'ss of exon 5
lower sequence: AT3G45240.3 (Arabidopsis thaliana), 5'ss of exon 5
GCTCTTTATCGAAGCTCTGTTGATGACAAGCATTATGCAATTAAGgttaggaa--actttttggtg----ggca------gacagattactgtaggaaacatggccac-atgggcatggttttttgatacagggcttttatgttctaatagttatcaagaatagtgcatttcgtcatttattgagctgaaaatcttttgaattgaag-----------------------
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GTTCTCTATCGAAGCACTGTCGATGACAAGCATTATGCTATTAAGgtatgctcttattttttatttccatggcaccactcaaaagcttattttgttttcctggtcttctatgaatctgctcattggaaattggatcaccatagtacagattatataaatgtttcttaagttgatcacataatgggattaaaatttctggacctgtggtgattatatttttggatttccag