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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGTCACTGAACCTTTGACGATTGAGGTTGATCAGATCTACCATCTTGCGTGCCCTGCATCTCCTATTTTCTACAAATATAATCCCGTGAAGgtatagttttgagtcttgttttgtgtatatttcattatcttttgcttggcatgcaaacatatttttctcaactgataaaggtttttcttttaacattcat...

Basic information

species Glycine max
transcript GLYMA12G06990.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G06990.1 (Glycine max), 5'ss of exon 5
lower sequence: AT2G28760.1 (Arabidopsis thaliana), 5'ss of exon 4
ATGTCACTGAACCTTTGACGATTGAGGTTGATCAGATCTACCATCTTGCGTGCCCTGCATCTCCTATTTTCTACAAATATAATCCCGTGAAGgtatagttttgagtcttgttttgtgtatatttcattatcttttgcttggcatgcaaacat-atttttctcaactgataaaggtttttcttttaacattcat
|||| ||||||||| |     | ||||||||||| ||||||||| | || || || || ||||| |||||||||||||| || ||||| ||||| |    || |   | |||      | |  ||   |  |  |   ||  ||      || | || |    |   ||     |  |  || |||       
ATGTGACTGAACCTCTTTTCGTCGAGGTTGATCAAATCTACCATTTAGCATGTCCCGCTTCTCCAATTTTCTACAAATACAACCCCGTTAAGgtttg---ttaaacttcgtt--aatcaaaactcgcaaaatgctagctgatatatttttatgacttatgatcatatatccttttcatctttctaatggcag-

upper sequence: GLYMA12G06990.1 (Glycine max), 5'ss of exon 5
lower sequence: AT5G59290.2 (Arabidopsis thaliana), 5'ss of exon 4
ATGTCACTGAACCTTTGACGATTGAGGTTGATCAGATCTACCATCTTGCGTGCCCTGCATCTCCTATTTTCTACAAATATAATCCCGTGAAGgtatagttttgagtcttgttttgtgtatatttcattatcttttgcttggcatgcaaacatatttttctcaactgataaaggtttttcttttaacattcat
|||| || || ||||||  ||| |||||||||| ||| ||||||||||| || ||||| |||||||| ||||||||||| || || || |||||     | ||| | | | | | |    || |||   || | |  |  | ||    |  || |  ||| |  || | | |                    
ATGTTACCGAGCCTTTGTTGATCGAGGTTGATCGGATTTACCATCTTGCTTGTCCTGCCTCTCCTATCTTCTACAAATACAACCCTGTTAAGgttcg--tgtgaatatagatatattctcatatcaccttcatataatcagaatcgttagttactgatctaatatgtttatgcag-----------------

upper sequence: GLYMA12G06990.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv06s0004g04390.t01 (Vitis vinifera), 5'ss of exon 5
ATGTCACTGAACCTTTGACGATTGAGGTTGATCAGATCTACCATCTTGCGTGCCCTGCATCTCCTATTTTCTACAAATATAATCCCGTGAAGgt--atagttttgagtcttgttttgtgtatatttcattatcttttgcttggcatgcaaacatatttttctcaactgataaaggtttttcttttaacattcat--
|||||||||| || |||  ||||||||||||| |||| ||||| ||||| || || || ||||||||||| || ||| | ||||| || |||||   ||  |||  |   |  ||| ||   |      |   |  |  |  |      | ||||| ||| |||  |  ||    || |   | | |  |  |   
ATGTCACTGAGCCATTGTTGATTGAGGTTGATAAGATATACCACCTTGCATGTCCCGCTTCTCCTATTTTTTATAAACACAATCCTGTAAAGgttagtatatttatgctatacttt-tgctcaccaatatgcttcattatcagtgctttagcatatatttgtcatgtattat---ttctctatctgatttggacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298196598|gb|HO041341.1|HO041341
EST:     ATCTTGCGTGCCCTGCATCTCCTATTTTCTACAAATATAATCCCGTGAAG                         ACAATAAAGACAAATGTGATTGGTACACTGAACATGCTTGGGCTTGCCAAG
genomic: ATCTTGCGTGCCCTGCATCTCCTATTTTCTACAAATATAATCCCGTGAAGgtatagtttt ... atttttacagACAATAAAGACAAATGTGATTGGTACACTGAACATGCTTGGGCTTGCCAAG
EST: gi|16277140|gb|BI942224.1|BI942224
EST:     ATCTTGCGTGCCCTGCATCTCCTATTTTCTACAAATATAATCCCGTGAAG                         ACAATAAAGACAAATGTGATTGGTACACTGAACATGCTTGGGCTTGCCAAG
genomic: ATCTTGCGTGCCCTGCATCTCCTATTTTCTACAAATATAATCCCGTGAAGgtatagtttt ... atttttacagACAATAAAGACAAATGTGATTGGTACACTGAACATGCTTGGGCTTGCCAAG
EST: gi|298196896|gb|HO041639.1|HO041639
EST:     ATCTTGCGTGCCCTGCATCTCCTATTTTCTACAAATATAATCCCGTGAAG                         ACAATAAAGACAAATGTGATTGGTACACTGAACATGCTTGGGCTTGCCAAG
genomic: ATCTTGCGTGCCCTGCATCTCCTATTTTCTACAAATATAATCCCGTGAAGgtatagtttt ... atttttacagACAATAAAGACAAATGTGATTGGTACACTGAACATGCTTGGGCTTGCCAAG