1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GTAGAGAGTATAGTATTGAGTATCATATCGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCAgtaagtttcataatttgttatactgcaacttacttgtcttttctacttatttgtatcctagagaagacaatgcaagcatgactgttactagatgctgcag...
species | Glycine max |
transcript | GLYMA12G06960.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TCTCCTGCAAATGTTGAAGCTGCA AAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTTAGCCGATGTEST: gi|193718133|gb|FK653403.1|FK653403
genomic: TCTCCTGCAAATGTTGAAGCTGCAgtaagtttca ... ggtattgcagAAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTTAGCCGATGT
EST: CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCA AAAGAGTGGAGAGATAGGAGAGATGATTTCAAAGAAAAAGGTTAGCCGATGEST: gi|193726878|gb|FK662794.1|FK662794
genomic: CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCAgtaagtttca ... ggtattgcagAAAGAGTGGAGAGATAGGAGAGATGATTTCAA-GAAAAAGGTTAGCCGATG
EST: CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCA AAAGAGTGGAGAGATAGGAGAGATGATTTCAAAGAAAAAGGTTAGCCGATGEST: gi|193467346|gb|FK434391.1|FK434391
genomic: CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCAgtaagtttca ... ggtattgcagAAAGAGTGGAGAGATAGGAGAGATGATTTCAA-GAAAAAGGTTAGCCGATG
EST: CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCA AAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTT-GCCGEST: gi|298170658|gb|HO019282.1|HO019282
genomic: CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCAgtaagtttca ... ggtattgcagAAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTTAGCCG
EST: CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGTA AAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTTAGCCGATGTEST: gi|27425977|gb|CA937497.1|CA937497
genomic: CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCAgtaagtttca ... ggtattgcagAAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTTAGCCGATGT
EST: CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCA AAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTTAGCCGATGTEST: gi|209702411|gb|BW656387.1|BW656387
genomic: CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCAgtaagtttca ... ggtattgcagAAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTTAGCCGATGT
EST: CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCA AAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTTAGCCGATGTEST: gi|193560164|gb|FK518883.1|FK518883
genomic: CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCAgtaagtttca ... ggtattgcagAAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTTAGCCGATGT
EST: CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCA AAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTTAGCCGEST: gi|193487584|gb|FK449709.1|FK449709
genomic: CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCAgtaagtttca ... ggtattgcagAAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTTAGCCG
EST: CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCA AAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTTAGCCGATGTEST: gi|17022209|gb|BM093243.1|BM093243
genomic: CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCAgtaagtttca ... ggtattgcagAAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTTAGCCGATGT
EST: CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCA AAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTTAGCCGATGTEST: gi|15337487|gb|BI498143.1|BI498143
genomic: CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCAgtaagtttca ... ggtattgcagAAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTTAGCCGATGT
EST: CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGNTGAAGCTGCA AAAGAGTGAAGAGATAGGAGAGATGATTTCCAGAAAAAGGTTAGCCGATGTEST: gi|193449046|gb|FK414275.1|FK414275
genomic: CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCAgtaagtttca ... ggtattgcagAAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTTAGCCGATGT
EST: CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCA AAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTTAGCCGATGTEST: gi|27426740|gb|CA938260.1|CA938260
genomic: CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCAgtaagtttca ... ggtattgcagAAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTTAGCCGATGT
EST: CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCA AAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTTAGCCGATGTEST: gi|193692274|gb|FK631103.1|FK631103
genomic: CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCAgtaagtttca ... ggtattgcagAAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTTAGCCGATGT
EST: CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCA AAAGAGTGGAGAGATAGGAGAGATGATTTCAAAGAAAAAGGTT-GCCGATGEST: gi|193677492|gb|FK615338.1|FK615338
genomic: CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCAgtaagtttca ... ggtattgcagAAAGAGTGGAGAGATAGGAGAGATGATTTCAA-GAAAAAGGTTAGCCGATG
EST: TGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCA AAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGT-AGCCGANGNEST: gi|193314440|gb|FK279275.1|FK279275
genomic: CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCAgtaagtttca ... ggtattgcagAAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTTAGCCGATGT
EST: CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCA AAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTTAGCCGATGTEST: gi|151400067|gb|EV269881.1|EV269881
genomic: CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCAgtaagtttca ... ggtattgcagAAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTTAGCCGATGT
EST: CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCA AAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTTAGCCGATGTEST: gi|208075089|gb|GD876370.1|GD876370
genomic: CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCAgtaagtttca ... ggtattgcagAAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTTAGCCGATGT
EST: CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCA AAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTTAGCCGEST: gi|193343999|gb|FK312375.1|FK312375
genomic: CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCAgtaagtttca ... ggtattgcagAAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTTAGCCG
EST: CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCA AAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTTAGCCGATGTEST: gi|193557717|gb|FK512030.1|FK512030
genomic: CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCAgtaagtttca ... ggtattgcagAAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTTAGCCGATGT
EST: CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCA AAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAEST: gi|298173257|gb|HO020241.1|HO020241
genomic: CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCAgtaagtttca ... ggtattgcagAAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAA
EST: CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCA AAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTTAGCCGATGTEST: gi|151397271|gb|EV267144.1|EV267144
genomic: CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCAgtaagtttca ... ggtattgcagAAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTTAGCCGATGT
EST: CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCA AAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTTAGTCGATGTEST: gi|193692948|gb|FK628501.1|FK628501
genomic: CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCAgtaagtttca ... ggtattgcagAAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTTAGCCGATGT
EST: CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCA AAAGAGTGGAGAGATAGGAGAEST: gi|207786123|gb|GD758320.1|GD758320
genomic: CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCAgtaagtttca ... ggtattgcagAAAGAGTGGAGAGATAGGAGA
EST: CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCA AAAGAGTGGAGAGATAGGAGAGGTGATTTCAAGAAAAAGGTTAGCCGATGTEST: gi|33387309|gb|CA850516.1|CA850516
genomic: CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCAgtaagtttca ... ggtattgcagAAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTTAGCCGATGT
EST: CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCA AAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTTAGCCGATGTEST: gi|193623589|gb|FK575051.1|FK575051
genomic: CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCAgtaagtttca ... ggtattgcagAAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTTAGCCGATGT
EST: CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCA AAAGAGTGGAGAGATAGGAGAGATGATTTEST: gi|209705175|gb|BW673715.1|BW673715
genomic: CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCAgtaagtttca ... ggtattgcagAAAGAGTGGAGAGATAGGAGAGATGATTT
EST: CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCA AAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTTAGCCGATGTEST: gi|193540732|gb|FK494382.1|FK494382
genomic: CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCAgtaagtttca ... ggtattgcagAAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTTAGCCGATGT
EST: CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCA AAAGAGTGGAGAGATAGGAGAGAATGATTTCAAGAAAAEST: gi|14259958|gb|BG882866.1|BG882866
genomic: CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCAgtaagtttca ... ggtattgcagAAAGAGTGGAGAGATAGGAGAGA-TGATTTCAAGAAAA
EST: CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCA AAAGAGTGGAGAGATATGAGAGATGATTTCAAGAAAAAGGTTAGCCGATGTEST: gi|19268884|gb|BM885140.1|BM885140
genomic: CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCAgtaagtttca ... ggtattgcagAAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTTAGCCGATGT
EST: CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCG AAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTTAGCCGATGTEST: gi|208337702|gb|GE136484.1|GE136484
genomic: CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCAgtaagtttca ... ggtattgcagAAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTTAGCCGATGT
EST: CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCA AAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTTAGCCGATGTEST: gi|193717462|gb|FK652860.1|FK652860
genomic: CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCAgtaagtttca ... ggtattgcagAAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTTAGCCGATGT
EST: CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCA AAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAEST: gi|11688939|gb|BF596677.1|BF596677
genomic: CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCAgtaagtttca ... ggtattgcagAAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAA
EST: CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCA AAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTTAGCCGATGTEST: gi|20498658|gb|BQ273588.1|BQ273588
genomic: CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCAgtaagtttca ... ggtattgcagAAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTTAGCCGATGT
EST: CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCA AAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTTAGCCGATGTEST: gi|298182923|gb|HO028136.1|HO028136
genomic: CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCAgtaagtttca ... ggtattgcagAAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTTAGCCGATGT
EST: CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCA AAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTTAGCCGATGTEST: gi|20498754|gb|BQ273684.1|BQ273684
genomic: CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCAgtaagtttca ... ggtattgcagAAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTTAGCCGATGT
EST: CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCA AAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTTAGCCGATGTEST: gi|193304997|gb|FK271810.1|FK271810
genomic: CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCAgtaagtttca ... ggtattgcagAAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTTAGCCGATGT
EST: CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCA AAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTTAGCCGATGTEST: gi|209704114|gb|BW673714.1|BW673714
genomic: CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCAgtaagtttca ... ggtattgcagAAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTTAGCCGATGT
EST: CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCA AAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTTAGCCGATGTEST: gi|209702412|gb|BW656388.1|BW656388
genomic: CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCAgtaagtttca ... ggtattgcagAAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTTAGCCGATGT
EST: CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCA AAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTTAGCCGATGT
genomic: CGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCAgtaagtttca ... ggtattgcagAAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTTAGCCGATGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTAGAGAGTATAGTATTGAGTATCATATCGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCAgtaagtttcataatttgttatactgcaacttacttgtcttttctacttatttgtatcctagagaagacaatgcaagcatgactgttactagatgctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC