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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTGGTGTTGGTGGCAGTGGTGGCGGCAAGGGTGCCCGTGGAATATTCAACATAGGAAAAGCACCAGTTACTAAAGTAGACAAAAATGCCAAAAACAAGgttgggagatttctttttcttctaccaatgagatggctgctgatgtttgtgtttgttttaatagcatgttccccatttgccattgttatctttccagttttagttatttcctccaggcaggagtgctggtaaataacttgacaataagttcatttaagagacaatatttatcttcttgttttgtttcattttgttcag

Basic information

species Glycine max
transcript GLYMA12G06530.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G06530.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv06s0004g05030.t01 (Vitis vinifera), 5'ss of exon 5
---AATTGGTGTTGGTGGCAGTGGTGGCGGCAAGGGTGCCCGTGGAATATTCAACATAGGAAAAGCACCAGTTACTAAAGTAGACAAAAATGCCAAAAACAAGgttgggagatttctttttcttctaccaatgagatggctgctgatgtttgtgtttgttttaatagcatgttccccatttgccattgttatctttccagttttagttatttcctccaggcaggagtgctggtaaataacttgacaataagt-tcatttaagagacaatatttatcttcttgttttgtttc--attttgttcag
   | | ||||||||||| |  |||||  |   ||| |  |||||||||||||||||||||||||| |   |||  ||||| || || ||||| || || ||||||   || |  || |||||| |  |||  || ||| |  ||   || || |      |   |  || ||  |  | | | ||  ||||  |  |    ||  | |   |||   |  |  |    | |    |  ||     |  | | | |||      |  ||  || | |  || | |  |||   |  | || |||
TGGATTAGGTGTTGGTGGTACGGGTGGAAG---GGGCGGTCGTGGAATATTCAACATAGGAAAAGCCCATATTATGAAAGTGGATAAGAATGCTAAGAATAAGgtt---agctaactgtttcttttgtcaa--aggtggtt--tgtctttagtttgcagcatc-caatatttttacagtatacaataattattatatcctccttgctca---cctatggttataatcattcgattttctctctctgactattattattattatcattattattgtttgtttatctatttttggacctagtacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|163923237|gb|EH039651.1|EH039651
EST:     ACATAGGAAAAGCACCAGTTACTAAAGTAGACAAAAATGCCAAAAACAAG                         ATCTATTTTAAAGATGTTGCTGGCTGTGATGAGGCAAAGCAAGAAATTATG
genomic: ACATAGGAAAAGCACCAGTTACTAAAGTAGACAAAAATGCCAAAAACAAGgttgggagat ... ttttgttcagATCTATTTTAAAGATGTTGCTGGCTGTGATGAGGCAAAGCAAGAAATTATG
EST: gi|16282080|gb|BI944826.1|BI944826
EST:     ACATAGGAAAAGCACCAGTTACTAAAGTAGACAAAAATGCCAAAAACAAG                         ATCTATTTTAAAGATGTTGCTGGCTGTGATGAGGCAAAGCAAGAAATTATG
genomic: ACATAGGAAAAGCACCAGTTACTAAAGTAGACAAAAATGCCAAAAACAAGgttgggagat ... ttttgttcagATCTATTTTAAAGATGTTGCTGGCTGTGATGAGGCAAAGCAAGAAATTATG
EST: gi|22522573|gb|BU081384.1|BU081384
EST:     ACATAGGAAAAGCACCAGTTACTAAAGTAGACAAAAATGCCAAAAACAAG                         ATCTATTTTAAAGATGTTGCTGGCTGTGATGAGGCAAAGCAAGAAATTATG
genomic: ACATAGGAAAAGCACCAGTTACTAAAGTAGACAAAAATGCCAAAAACAAGgttgggagat ... ttttgttcagATCTATTTTAAAGATGTTGCTGGCTGTGATGAGGCAAAGCAAGAAATTATG