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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAATGTGTTCCTGAAGATGCAATCCACTTTATTGTGTCAACATTTTTTGATCAAGTTGTGACACTCTCAACCCATCCATATGGTTGCCGGGTGATACAGgtaagttctcttcactgcttatattacttttataatgtacctgagatcgtttgtcatataagaataccttctacacgacag

Basic information

species Glycine max
transcript GLYMA12G06430.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G06430.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv06s0004g05100.t01 (Vitis vinifera), 5'ss of exon 5
TGAATGTGTTCCTGAAGATGCAATCCACTTTATTGTGTCAACATTTTTTGATCAAGTTGTGACACTCTCAACCCATCCATATGGTTGCCGGGTGATACAGgtaagtt-ctcttcactgcttatatt--acttttataatgt---acctgagatcgtttgtcatataag-----aataccttctacacgacag--------
||||||||||||||||||||| || || |||||  | |||||||| |||||||| |||||||| |||||||||||||||||||| || || ||||||||||| ||   || || | ||||||| ||  || | |  |  ||   |  |||   | |  |  | |   |     ||||  ||  | | |  |         
TGAATGTGTTCCTGAAGATGCTATTCAGTTTATCATCTCAACATTCTTTGATCAGGTTGTGACCCTCTCAACCCATCCATATGGGTGTCGTGTGATACAGgttagaaactttttattgcttatcttttacatcttgagggttcaatttgaagacataaggaagaagtgcttccaatatttttcataggcaaagatcaaat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193482748|gb|FK446587.1|FK446587
EST:     GCCGGGTGATACAG                         AGAGTGCTGGAACACTGCAAAGACCCTACGACACAACAGAAAGTTATGGAT
genomic: GCCGGGTGATACAGgtaagttctc ... tacacgacagAGAGTGCTGGAACACTGCAAAGACCCTACGACACAACAGAAAGTTATGGAT
EST: gi|105633593|gb|DW246956.1|DW246956
EST:     TCAAGTTGTGACACTCTCAACCCCATCCATATGGTTGCCGGGTGATACAG                         AGAGTGCTGGAACACTGCAAAGACCCTACGACACAACAGAAAGTTATGGAT
genomic: TCAAGTTGTGACACTCTCAA-CCCATCCATATGGTTGCCGGGTGATACAGgtaagttctc ... tacacgacagAGAGTGCTGGAACACTGCAAAGACCCTACGACACAACAGAAAGTTATGGAT