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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTCCTTACTCAAATAGAGCGATATCTGAAACAGGCTATTGTAGACAAGAATCCAGTTGTTGCAAGTGCAGCCCTAGTTAGCGGCATTCATATACTCCAGgtattaacaaaatctatttgtaattccttatctcatattccatatgtgttgcctgcttattttatgtccccccttatcag

Basic information

species Glycine max
transcript GLYMA12G04820.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G04820.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os03g12590.1 (Oryza sativa), 5'ss of exon 5
TCTCCTTACTCAAATAGAGCGATATCTGAAACAGGCTATTGTAGACAAGAATCCAGTTGTTGCAAGTGCAGCCCTAGTTAGCGGCATTCATATACTCCAGgta---ttaacaaaatctatttgtaattccttatctcatattccatatgt-gttgcctgcttattttatgtccccccttatcag
 |||||||||||||| ||| ||||| ||||||| ||||| || || |||||||| || ||||| ||||| || || ||||| ||||| ||| | || ||||||   ||    |  |||||  | ||      ||      || |  | ||      |||    | |||| | |           
CCTCCTTACTCAAATTGAGAGATATTTGAAACAAGCTATAGTTGATAAGAATCCTGTGGTTGCTAGTGCTGCTCTTGTTAGTGGCATCCATCTGCTTCAGgtacacttctatagttctatacgaaaaaaaacataattcttttcggaagtcaaaaactgtacttattatatgcag---------

upper sequence: GLYMA12G04820.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G036034_T01 (Zea mays), 5'ss of exon 5
TCTCCTTACTCAAATAGAGCGATATCTGAAACAGGCTATTGTAGACAAGAATCCAGTTGTTGCAAGTGCAGCCCTAGTTAGCGGCATTCATATACTCCAGgtat-taacaaaatctatttgta-attccttatctcatattccatatgtgttgcctgcttattttatgtccccc-cttatcag------------
||| || || ||||| ||| | ||| |||| || || ||||| ||||||||||| |||||||| ||||||||||| ||||| |||||  |  | || || |||| |       || | ||| | ||    |  ||  | |     |  | | |     || | ||||||   || | | |  |            
TCTTCTCACCCAAATCGAGAGGTATTTGAAGCAAGCCATTGTTGACAAGAATCCTGTTGTTGCCAGTGCAGCCCTTGTTAGTGGCATCTACTTGCTTCAAgtatgtcctgtgctccacttggatatattgttactagtttgtggcagctttagttcttttttattatgttttccacatgtttgtactattggcag

upper sequence: GLYMA12G04820.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G178618_T01 (Zea mays), 5'ss of exon 5
TCTCCTTACTCAAATAGAGCGATATCTGAAACAGGCTATTGTAGACAAGAATCCAGTTGTTGCAAGTGCAGCCCTAGTTAGCGGCATTCATATACTCCAGgtattaacaaaatctatttgtaattccttatct---catatt-----ccatatgtgttgcc-----tgcttattttatgtccccc-cttatcag------------
 || || || ||||| ||| | ||| |||| || || ||||| ||||||||||| |||||||| ||||| ||||| ||||| |||||  |  | || || ||||   |   |  ||| | |  | |   |  |    |||||        |  |||  ||      |  || | ||||||   || | | |  |            
CCTTCTCACCCAAATCGAGAGGTATTTGAAGCAAGCCATTGTTGACAAGAATCCTGTTGTTGCCAGTGCGGCCCTTGTTAGTGGCATCTACTTGCTTCAAgtatgtcctgcagttatattttgtgctccagttggatatattgttactagttggtgcagctatagatatttttattatgttttccacatgtttgtattattggcag

upper sequence: GLYMA12G04820.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv03s0063g02450.t01 (Vitis vinifera), 5'ss of exon 5
TCTCCTTACTCAAATAGAGCGATATCTGAAACAGGCTATTGTAGACAAGAATCCAGTTGTTGCAAGTGCAGCCCTAGTTAGCGGCATTCATATACTCCAGgtattaacaaaatctatttgtaattccttatctcatattccatatgtgttgcctgcttattttatgtccccccttatcag---------------------
 || || || || || ||||||||  ||||||| || || || |||||||| || ||||||||||||||||| || || || || |||||| | |||||||||  |      | | | |   |||  || | |  ||||  |||| | ||   |  |  | |||  | | |   ||  |                      
CCTTCTCACCCAGATTGAGCGATACTTGAAACAAGCAATAGTTGACAAGAACCCTGTTGTTGCAAGTGCAGCTCTTGTCAGTGGAATTCATCTTCTCCAGgtacaattgggttgtgtgta-gattttttttattctattt-atatat-ttaaattatcctcttacatgctctaataatatgattattatttttttggatag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193573633|gb|FK530995.1|FK530995
EST:     CAGCCCTAGTTAGCGGTCATTCATATACTCCAG                         ACAAATCCCGAGATTGTAAAAAGATGGAGTAATGAGGTTCAGGAAGCTGTT
genomic: CAGCCCTAGTTAGCGG-CATTCATATACTCCAGgtattaacaa ... cccttatcagACAAATCCCGAGATTGTAAAAAGATGGAGTAATGAGGTTCAGGAAGCTGTT
EST: gi|193460558|gb|FK427999.1|FK427999
EST:     CAGCCCTAGTTAGCGGCATTCATATACTCCAG                         ACAAATCCCGAGATTTGTTAAAAAGATGGAGTAATGAGGTTCAGGAAGCTG
genomic: CAGCCCTAGTTAGCGGCATTCATATACTCCAGgtattaacaa ... cccttatcagACAAATCCCGAGA-TTG-TAAAAAGATGGAGTAATGAGGTTCAGGAAGCTG
EST: gi|193620509|gb|FK569101.1|FK569101
EST:     CAGCCCTAGTTAGCGGCATTCATATACTCCAG                         ACAAATCCCGAGATTGTAAAAAGATGGAGTAATGAGGTTCAGGAAGCTGTT
genomic: CAGCCCTAGTTAGCGGCATTCATATACTCCAGgtattaacaa ... cccttatcagACAAATCCCGAGATTGTAAAAAGATGGAGTAATGAGGTTCAGGAAGCTGTT