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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCCTCAAGAACTTTACAAAGTCTGCTCGGGATCTCATTATGCGGTTACAAAAGATTGATGGTGACAATTACCCTGAGgtgtgtaacactgtcggtttctgtgtattttgttacattacgccccttgttttgatttcatcggttatatgaaattaaaagtttttaaagaagaatatgtactaaggtctcaactattgctgattttttattttttatttctttttttaatgatacag

Basic information

species Glycine max
transcript GLYMA12G04460.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G04460.1 (Glycine max), 5'ss of exon 5
lower sequence: AT2G21520.1 (Arabidopsis thaliana), 5'ss of exon 4
GGCCTCAAGAACTTTACAAAGTCTGCTCGGGATCTCATTATGCGGTTACAAAAGATTGATGGTGACAATTACCCTGAGgtgtgtaacactgtcggtttctgtgtattttgttacattacgccccttgttttgatttcatcggttatatgaaattaaaagtttttaaagaagaatatgtactaaggtctcaactattgctgattttttattttttatttctttttttaatgatacag
||  | || |||||||  ||||||||||| ||||| || |  || ||||||||||||||||| |||||||| |||||||| |     | |    | ||||   || ||  |    | | |   |   |  | || |    || | | ||  |||  | |                                                                             
GGATTGAAAAACTTTAACAAGTCTGCTCGAGATCTTATCACACGATTACAAAAGATTGATGGAGACAATTATCCTGAGgtattagttaattggagcttcta-atacttgatc---tcaggtatcaaatgctaatct---tggctttgtggtatttcatgcag--------------------------------------------------------------------------

upper sequence: GLYMA12G04460.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv03s0038g04470.t01 (Vitis vinifera), 5'ss of exon 6
GGCCTCAAGAACTTTACAAAGTCTGCTCGGGATCTCATTATGCGGTTACAAAAGATTGATGGTGACAATTACCCTGAGgtgtgtaacactgtcggtttctgtgtattttgttacattacgccccttgttttgatttcatcggttatatgaaattaaaagtttttaaagaagaatatgtactaaggtctcaactattgctgattttttattttttatttctttttttaatgatacag
||  | |||||| | |||||| |||| |||||||||||||||||| | || ||||||||||| || |||||||||||||| |  |||  |     ||||||| |    || ||   ||      |  |    ||||||    | ||||         | | | |      ||   || |||    ||| ||||  ||| |                                    
GGTTTTAAGAACCTAACAAAGGCTGCACGGGATCTCATTATGCGGCTGCAGAAGATTGATGGGGATAATTACCCTGAGgtattcaacctt-----tttctgt-tgacatgataagctatagttgtaatcc--atttcaaaattgatataggtgactgaatatgtgccctggatcttgaact---ctcttaactgctgcag------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193724403|gb|FK657985.1|FK657985
EST:     GGGATCTCATTATGCGGTTACAAAAGATTGATGGTGACAATTACCCTGAG                         ACTCTCTGCCAAATGTTTATCATAAATGCTGGCCC
genomic: GGGATCTCATTATGCGGTTACAAAAGATTGATGGTGACAATTACCCTGAGgtgtgtaaca ... aatgatacagACTCTCTGCCAAATGTTTATCATAAATGCTGGCCC
EST: gi|193320737|gb|FK283122.1|FK283122
EST:     GGGATCTCATTATGCGGTTACAAAAGATTGATGGTGACAATTACCCTGAG                         ACTCTCTGCCAAATGTTTATCATAAAATAGACTAGGCCCTGGATTTAG
genomic: GGGATCTCATTATGCGGTTACAAAAGATTGATGGTGACAATTACCCTGAGgtgtgtaaca ... aatgatacagACTCTCTGCCAAATGTTTATCATAAA-T-G-CT-GGCCCTGGATTTAG
EST: gi|193481751|gb|FK446870.1|FK446870
EST:     GGGATCTCATTATGCGGTTACAAAAGATTGATGGTGACAATTACCCTGAG                         ACTCTCTGCCAAATGTTTATCATAAATGCTGGCCCTGGATTTAGGTTGCTA
genomic: GGGATCTCATTATGCGGTTACAAAAGATTGATGGTGACAATTACCCTGAGgtgtgtaaca ... aatgatacagACTCTCTGCCAAATGTTTATCATAAATGCTGGCCCTGGATTTAGGTTGCTA
EST: gi|193399516|gb|FK363069.1|FK363069
EST:     GGGATCTCATTATGCGGTTACAAAAGATTGATGGTGACAATTACCCTGAG                         ACTCTCTGCCAAATGTTTATCATAAATGCTGGCCCTGGATTTAGGTTGCTA
genomic: GGGATCTCATTATGCGGTTACAAAAGATTGATGGTGACAATTACCCTGAGgtgtgtaaca ... aatgatacagACTCTCTGCCAAATGTTTATCATAAATGCTGGCCCTGGATTTAGGTTGCTA
EST: gi|151397966|gb|EV267839.1|EV267839
EST:     GGGATCTCATTATGCGGTTACAAA-GATTGATGGTGACAATTACCCTGAG                         ACTCTCTGCCAAATGTTTATCATAAATGCTGGCCCTGGATTTAG-TTGCTA
genomic: GGGATCTCATTATGCGGTTACAAAAGATTGATGGTGACAATTACCCTGAGgtgtgtaaca ... aatgatacagACTCTCTGCCAAATGTTTATCATAAATGCTGGCCCTGGATTTAGGTTGCTA
EST: gi|207760411|gb|GD731382.1|GD731382
EST:     GGGATCTCATTATGCGGTTACAAAAGATTGATGGTGACAATTACCCTGAG                         ACTCTCTGCCAAATGTTTATCATAA
genomic: GGGATCTCATTATGCGGTTACAAAAGATTGATGGTGACAATTACCCTGAGgtgtgtaaca ... aatgatacagACTCTCTGCCAAATGTTTATCATAA