Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCTTCGGGATGATAAGCAGTTCTTTCAAGACCATCCTGGTGCAGTGCCTATCACCACAGCACAGgtgcttgctatttgccactacttcctttatatatacaattaattaattgcttttgcattattttttttttatttcactgttttttcttttagccctttttttgttggtcacagtatgggcatgagcttacttttgataggttagtggtctgatttactgtattttgtgaag

Basic information

species Glycine max
transcript GLYMA12G03660.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G03660.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os02g02840.1 (Oryza sativa), 5'ss of exon 5
ATCTTCGGGATGATAAGCAGTTCTTTCAAGACCATCCTGGTGCAGTGCCTATCACCACAGCACAGgtgct----tgctatttgccactacttcctttat-atatacaattaattaattgcttttgcattattttttttttatttcactgttttttcttttagccctttttttgttggtcacagtatgggcatgagcttacttttgataggttagtggtctgatttactgtattttgtgaag
||||||| ||||| |||||||| |||   |||||||||||||| || ||||||||||| || ||||| |     ||  |||      |  ||  ||  | || |||  |    | |  | | |      |  |  | |  | | || ||   | ||||     | ||||||||||  | |    || | ||      ||                                          
ATCTTCGAGATGACAAGCAGTTTTTTGTGGACCATCCTGGTGCTGTTCCTATCACCACTGCTCAGgtacagttgtggcattgtgggttgtttaattccttatttactgtagcatcagagatgtacttgcaactcctgtggactacattgccatatctt--gatcatttttttgttcctta----attgccacttttgtag-----------------------------------------

upper sequence: GLYMA12G03660.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM5G803949_T02 (Zea mays), 5'ss of exon 5
ATCTTCGGGATGATAAGCAGTTCTTTCAAGACCATCCTGGTGCAGTGCCTATCACCACAGCACAGgtgcttgctatttgccactacttcctttatatatacaattaattaattgcttttgcattattttttttttatttcactgttttttcttttagccctttttttgttggtcacagtatgggcatgagcttacttttgataggttagtggtctgatttactgtattttgtgaag
||||||| ||||| ||||||||||||   |||||||||||||| || |||||||| || || |||||  | |  ||| |  | |   |    | | |       ||   | |      | ||| |   |||        | | ||   || | | | |   | | |  | | |  |    ||  |     ||    | | | |   | ||   ||      |      || |    
ATCTTCGAGATGACAAGCAGTTCTTTGTGGACCATCCTGGTGCTGTTCCTATCACTACTGCTCAGgta-tggtcattggtgattcactatcctgtttgctgctctagggagtaa----tacataaacgttt----gagacccggtgaattttgtcaactactctgtcctggttttcttcttgtccggtgactgttgtctaaca---tggttaccttgccctcaccgccttatag--

upper sequence: GLYMA12G03660.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv03s0038g02380.t01 (Vitis vinifera), 5'ss of exon 6
ATCTTCGGGATGATAAGCAGTTCTTTCAAGACCATCCTGGTGCAGTGCCTATCACCACAGCACAGgtgcttgctatttgccactacttcctttatatatacaattaattaattgcttttgcattattttttttttatttcactgttttttcttttagccctttttttgttggtcacagtatgggcatgagcttacttttgataggttagtggtctgatttactgtattttgtgaag
||||||| |||||||||||||||||   ||| || |||||||||||||| || |||||||| |||||  ||     |||  | | | |  | |  || ||  || |  |  |   |  | || | ||| ||   |  | |     || | ||| || |||||   ||||   |  || |    ||   |       ||  || ||        ||||||| ||   || | |||||
ATCTTCGAGATGATAAGCAGTTCTTCATAGATCACCCTGGTGCAGTGCCCATTACCACAGCTCAGgtattt-----ttgatattgccttgtgtg-atttaagatgatcttgtgagtactacactgtttattgcatcatcc-----ttgtgcttgtatcccttggattgt--attgcaatcactgcccaa-------ttaaatgggc-------ctgatttcctactttctttgaag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208044920|gb|GD840154.1|GD840154
EST:     AGCAGTTCTTTCAAGACCATCCTGGTGCAGTGCCTATCACCACAGCACAG                         GGTGAGGAGCTGAGAAAGCTTATCGGTGCTCCAGTTTACATTGAATGTAGT
genomic: AGCAGTTCTTTCAAGACCATCCTGGTGCAGTGCCTATCACCACAGCACAGgtgcttgcta ... ttttgtgaagGGTGAGGAGCTGAGAAAGCTTATCGGTGCTCCAGTTTACATTGAATGTAGT
EST: gi|298171505|gb|HO016537.1|HO016537
EST:     AGCAGTTCTTTCAAGACCATCCTGGTGCAGTGCCTATCACCACAGCACAG                         GGTGAGGAGCTGAGAAAGCTTATCGGTGCTCCAGTTTACATTGAATGTAGT
genomic: AGCAGTTCTTTCAAGACCATCCTGGTGCAGTGCCTATCACCACAGCACAGgtgcttgcta ... ttttgtgaagGGTGAGGAGCTGAGAAAGCTTATCGGTGCTCCAGTTTACATTGAATGTAGT
EST: gi|192329145|gb|FK021132.1|FK021132
EST:     AGCAGTTCTTTCAAGACCATCCTGGTGCAGTGCCTATCACCACAGCACAG                         GGTGAGGAGCTGAGAAAGCTTATCGGTGCTCCAGTTTACATTGAATGTAGT
genomic: AGCAGTTCTTTCAAGACCATCCTGGTGCAGTGCCTATCACCACAGCACAGgtgcttgcta ... ttttgtgaagGGTGAGGAGCTGAGAAAGCTTATCGGTGCTCCAGTTTACATTGAATGTAGT
EST: gi|58014286|gb|CX701028.1|CX701028
EST:     AGCAGTTCTTTCAAGACCATCCTGGTGCAGTGCCTATCACCACAGCACAG                         GGTGAGGAGCTGAGAAAGCTTATCGGTGCTCCAGTTTACATTGAATGTAGT
genomic: AGCAGTTCTTTCAAGACCATCCTGGTGCAGTGCCTATCACCACAGCACAGgtgcttgcta ... ttttgtgaagGGTGAGGAGCTGAGAAAGCTTATCGGTGCTCCAGTTTACATTGAATGTAGT
EST: gi|58020948|gb|CX707690.1|CX707690
EST:     AGCAGTTCTTTCAAGACCATCCTGGTGCAGTGCCTATCACCACAGCACAG                         GGTGAGGAGCTGAGAAAGCTTATCGGTGCTCCAGTTTACATTGAATGTAGT
genomic: AGCAGTTCTTTCAAGACCATCCTGGTGCAGTGCCTATCACCACAGCACAGgtgcttgcta ... ttttgtgaagGGTGAGGAGCTGAGAAAGCTTATCGGTGCTCCAGTTTACATTGAATGTAGT
EST: gi|151401174|gb|EV270988.1|EV270988
EST:     AGCAGTTCTTTCAAGACCATCCTGGTGCAGTGCCTATCACCACAGCACAG                         GGTGAGGAGCTGAGAAAGCTTATCGGTGCTCCAGTTTACATTGAATGTAGT
genomic: AGCAGTTCTTTCAAGACCATCCTGGTGCAGTGCCTATCACCACAGCACAGgtgcttgcta ... ttttgtgaagGGTGAGGAGCTGAGAAAGCTTATCGGTGCTCCAGTTTACATTGAATGTAGT
EST: gi|151405308|gb|EV275122.1|EV275122
EST:     AGCAGTTCTTTCAAGACCATCCTGGTGCAGTGCCTATCACCACAGCACAG                         GGTGAGGAGCTGAGAAAGCTTATCGGTGCTCCAGTTTACATTGAATGTAGT
genomic: AGCAGTTCTTTCAAGACCATCCTGGTGCAGTGCCTATCACCACAGCACAGgtgcttgcta ... ttttgtgaagGGTGAGGAGCTGAGAAAGCTTATCGGTGCTCCAGTTTACATTGAATGTAGT
EST: gi|18039985|gb|BM308279.1|BM308279
EST:     AGCAGTTCTTTCAAGACCATCCTGGTGCAGTGCCTATCACCACAGCACAG                         GGTGAGGAGCTGATAAAGCTTATCGGTGCTCCAGTTTACATTGAATGTAGT
genomic: AGCAGTTCTTTCAAGACCATCCTGGTGCAGTGCCTATCACCACAGCACAGgtgcttgcta ... ttttgtgaagGGTGAGGAGCTGAGAAAGCTTATCGGTGCTCCAGTTTACATTGAATGTAGT
EST: gi|308222701|gb|HO760611.1|HO760611
EST:     GGCAGTTCTTTCAAGACCATCCTGGTGCAGTGCCTATCACCACAGCACAG                         GGTGAGGAGCTGAGAAAGCTTATCGGTGCTCCAGTTTACATTGAATGTAGT
genomic: AGCAGTTCTTTCAAGACCATCCTGGTGCAGTGCCTATCACCACAGCACAGgtgcttgcta ... ttttgtgaagGGTGAGGAGCTGAGAAAGCTTATCGGTGCTCCAGTTTACATTGAATGTAGT
EST: gi|58021197|gb|CX707939.1|CX707939
EST:     AGCAGTTCTTTCAAGACCATCCTGGTGCAGTGCCTATCACCACAGCACAG                         GGTGAGGAGCTGAGAAAGCTTATCGGTGCTCCAGTTTACATTGAATGTAGT
genomic: AGCAGTTCTTTCAAGACCATCCTGGTGCAGTGCCTATCACCACAGCACAGgtgcttgcta ... ttttgtgaagGGTGAGGAGCTGAGAAAGCTTATCGGTGCTCCAGTTTACATTGAATGTAGT
EST: gi|298170161|gb|HO018785.1|HO018785
EST:     AGCAGTTCTTTCAAGACCATCCTGGTGCAGTGCCTATCACCACAGCACAG                         GGTGAGGAGCTG
genomic: AGCAGTTCTTTCAAGACCATCCTGGTGCAGTGCCTATCACCACAGCACAGgtgcttgcta ... ttttgtgaagGGTGAGGAGCTG
EST: gi|192329144|gb|FK021131.1|FK021131
EST:     AGCAGTTCTTTCAAGACCATCCTGGTGCAGTGCCTATCACCACAGCACAG                         GGTGAGGAGCTGAGAAAGCTTATCGGTGCTCCAGTTTACATTGAATGTAGT
genomic: AGCAGTTCTTTCAAGACCATCCTGGTGCAGTGCCTATCACCACAGCACAGgtgcttgcta ... ttttgtgaagGGTGAGGAGCTGAGAAAGCTTATCGGTGCTCCAGTTTACATTGAATGTAGT
EST: gi|298172850|gb|HO019834.1|HO019834
EST:     AGCAGTTCTTTCAAGACCATCCTGGTGCAGTGCCTATCACCACAGCACAG                         GGTGAGGAGCTGAGAAAGCTTATCGGTGCTCCAGTTTACATTGAATGTAGT
genomic: AGCAGTTCTTTCAAGACCATCCTGGTGCAGTGCCTATCACCACAGCACAGgtgcttgcta ... ttttgtgaagGGTGAGGAGCTGAGAAAGCTTATCGGTGCTCCAGTTTACATTGAATGTAGT