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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGGGTGGAGACATTGTTCATCATGATGGTAAAGGGTCTGAATCTATTTATGGTGGCACCTTTCCTGATGATAATTTCAAGATTAAACATTCTCACGCTGgtgagtaacaatttgcttggatgaaagcatttcgctttattattaatatttttataacttgatgtttttctgtcatttctaagatgtgtttgagttgtttctataaaatcttactcccatgattgcag

Basic information

species Glycine max
transcript GLYMA12G03540.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213599098|gb|DB958359.1|DB958359
EST:     TGGTGGCACCTTTCCTGATGATAATTTCAAGATTAA-CATTCTCACGCTG                         GTGTTGTTTCTATG
genomic: TGGTGGCACCTTTCCTGATGATAATTTCAAGATTAAACATTCTCACGCTGgtgagtaaca ... atgattgcagGTGTTGTTTCTATG
EST: gi|10253416|gb|BE821182.1|BE821182
EST:     TGGTGGCACCTTTCCTGATGATAATTTCAAGATTAAACATTCTCACGCTG                         GTGTTGTTTCTATGGCAAATTCAGGACCTGATTCCAATGGCTCACAGTTTT
genomic: TGGTGGCACCTTTCCTGATGATAATTTCAAGATTAAACATTCTCACGCTGgtgagtaaca ... atgattgcagGTGTTGTTTCTATGGCAAATTCAGGACCTGATTCCAATGGCTCACAGTTTT
EST: gi|6094831|gb|AW119445.1|AW119445
EST:     TGGTGGCACCTTTCCTGATGATAATTTCAAGATTAAACATTCTCACGCTG                         GTGTTGTTTCTATGGCAAATTCAGGACCTGATTCCAATGGCTCACAGTTTT
genomic: TGGTGGCACCTTTCCTGATGATAATTTCAAGATTAAACATTCTCACGCTGgtgagtaaca ... atgattgcagGTGTTGTTTCTATGGCAAATTCAGGACCTGATTCCAATGGCTCACAGTTTT
EST: gi|27424619|gb|CA936139.1|CA936139
EST:     TGGTGGCACCTTTCCTGATGATAATTTCAAGATTAAACATTCTCACGCTG                         GTGTTGTTTCTATGGCAAATTCAGGACCTGATTCCAACGGCTCACAGTTTT
genomic: TGGTGGCACCTTTCCTGATGATAATTTCAAGATTAAACATTCTCACGCTGgtgagtaaca ... atgattgcagGTGTTGTTTCTATGGCAAATTCAGGACCTGATTCCAATGGCTCACAGTTTT
EST: gi|151409297|gb|EV279105.1|EV279105
EST:     TGGTGGCACCTTTCCTGATGATAATTTCAAGATTAAACATTCTCACGCTG                         GTGTTGTTTCTATGACAAAT
genomic: TGGTGGCACCTTTCCTGATGATAATTTCAAGATTAAACATTCTCACGCTGgtgagtaaca ... atgattgcagGTGTTGTTTCTATGGCAAAT
EST: gi|208274684|gb|GE066342.1|GE066342
EST:     TAAACATTCTCACGCTG                         GTGTCGTTTCTATGGCAAATTCAGGACCTGATTCCAATGGCTCACAGTTTT
genomic: TAAACATTCTCACGCTGgtgagtaaca ... atgattgcagGTGTTGTTTCTATGGCAAATTCAGGACCTGATTCCAATGGCTCACAGTTTT
EST: gi|5126719|gb|AI748455.1|AI748455
EST:     TGGTGGCACCTTTCCTGATGATAATTTCAAGATTAAACATTCTCACGCTG                         GTGTTGTTTCTATGGCAAATTCAGGACCTGATTCCAATGGCTCACAGTTTT
genomic: TGGTGGCACCTTTCCTGATGATAATTTCAAGATTAAACATTCTCACGCTGgtgagtaaca ... atgattgcagGTGTTGTTTCTATGGCAAATTCAGGACCTGATTCCAATGGCTCACAGTTTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CAGGGTGGAGACATTGTTCATCATGATGGTAAAGGGTCTGAATCTATTTATGGTGGCACCTTTCCTGATGATAATTTCAAGATTAAACATTCTCACGCTGgtgagtaacaatttgcttggatgaaagcatttcgctttattattaatatttttataacttgatgtttttctgtcatttctaagatgtgtttgagttgtttctataaaatcttactcccatgattgcag

- - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG