1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TGATTTGTCCAGGCAGCAATACATGAACAAAGAGGAACAAACTACTATTAATCATTTTCATGAGAAGCTTCTCAAGCTCAAAGATATGATGAAAACCAAGgtaggctatattactatttggctgaaatgatcaaattttgacgaagaccaaagtgtgcatttttttttgttaaagtctgtcaagaagtatatgcctgtgtattaaatctgtcatggaatttgaatctcaactacctatttcag
species | Glycine max |
transcript | GLYMA12G02920.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: ATCATTTTCATGAGAAGCTTCTCAAGCTCAAAGATATGATGAAAACCAAG GCTGGGAAAAGGAGGGCAGAGAGAAGGCATAAGTTCATGGAGGAGTTTGTGEST: gi|207687930|gb|GD669483.1|GD669483
genomic: ATCATTTTCATGAGAAGCTTCTCAAGCTCAAAGATATGATGAAAACCAAGgtaggctata ... cctatttcagGCTGGGAAAAGGAGGGCAGAGAGAAGGCATAAGTTCATGGAGGAGTTTGTG
EST: ATCATTTTCATGAGAAGCTTCTCAAGCTCAAAGATATGATGAAAACCAAG GCTGGGAAAAGGAGGGCAGAGAGAAGGCATAAGTTCATGGAGGAGTTTGTGEST: gi|209698483|gb|BW667280.1|BW667280
genomic: ATCATTTTCATGAGAAGCTTCTCAAGCTCAAAGATATGATGAAAACCAAGgtaggctata ... cctatttcagGCTGGGAAAAGGAGGGCAGAGAGAAGGCATAAGTTCATGGAGGAGTTTGTG
EST: ATCATTTTCATGAGAAGCTTCTCAAGCTCAAAGATATGATGAAAACCAAG GCTGGGAAAAGGAGGGCAGAGAGAAGGCATAAGTTCATGGAGGAGTTTGTGEST: gi|193512443|gb|FK469039.1|FK469039
genomic: ATCATTTTCATGAGAAGCTTCTCAAGCTCAAAGATATGATGAAAACCAAGgtaggctata ... cctatttcagGCTGGGAAAAGGAGGGCAGAGAGAAGGCATAAGTTCATGGAGGAGTTTGTG
EST: ATCATTTTCATGAGAAGCTTCTCAAGCTCAAAGATATGATGAAAACCAAG GCTGGGAAAAGGAGGGCAGAGAGAAGGCATAAGTTCATGGAGGAGTTTGTGEST: gi|58022079|gb|CX708820.1|CX708820
genomic: ATCATTTTCATGAGAAGCTTCTCAAGCTCAAAGATATGATGAAAACCAAGgtaggctata ... cctatttcagGCTGGGAAAAGGAGGGCAGAGAGAAGGCATAAGTTCATGGAGGAGTTTGTG
EST: ATCATTTTCATGAGAAGCTTCTCAAGCTCAAAGATATGATGAAAACCAAG GCTGGGAAAAGGAGGGCAGAGAGAAGGCATAAGTTCATGGAGGAGTTTGTGEST: gi|193429136|gb|FK396352.1|FK396352
genomic: ATCATTTTCATGAGAAGCTTCTCAAGCTCAAAGATATGATGAAAACCAAGgtaggctata ... cctatttcagGCTGGGAAAAGGAGGGCAGAGAGAAGGCATAAGTTCATGGAGGAGTTTGTG
EST: ATCATTTTCATGAGAAGCTTCTCAAGCTCAAAGATATGATGAAAACCAAG GCTGGGAAAAGGAGGGCAGAGAGAAGGCATAAGTTCATGGAGGAGTTTGTG
genomic: ATCATTTTCATGAGAAGCTTCTCAAGCTCAAAGATATGATGAAAACCAAGgtaggctata ... cctatttcagGCTGGGAAAAGGAGGGCAGAGAGAAGGCATAAGTTCATGGAGGAGTTTGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGATTTGTCCAGGCAGCAATACATGAACAAAGAGGAACAAACTACTATTAATCATTTTCATGAGAAGCTTCTCAAGCTCAAAGATATGATGAAAACCAAGgtaggctatattactatttggctgaaatgatcaaattttgacgaagaccaaagtgtgcatttttttttgttaaagtctgtcaagaagtatatgcctgtgtattaaatctgtcatggaatttgaatctcaactacctatttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA