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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTTCTGTAATAATTGGCACTGGTACCAATGCTTGCTATTTGGAACGGGTTGATGCTATTATCAAGTGTCAAGGTCTTCCTACAACATCAGGATACATGgtattgctctttttttttgtttgttttttttttcacttttgtttattgtcttgttttgaacctagtataaatcttctgtttattaggttgtaaatatgga...

Basic information

species Glycine max
transcript GLYMA12G02450.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G02450.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv06s0061g00040.t01 (Vitis vinifera), 5'ss of exon 5
TGCTTCTGTAATAATTGGCACTGGTACCAATGCTTGCTATTTGGAACGGGTTGATGCTATTATCAAGTGTCAAGGTCTTCCTACAACATCAGGATACATGgtattgctctttttttttgtttgttttttttttcacttttgtttattgtcttgttttgaacctagtataaatcttctgtttattaggttgtaaatatgga----------------
|||| | || |||||||| || ||||| ||||| |||||||||||||||   ||||||||||| |||||||| || |||| |||||| || |||  ||||||||        ||| ||| || | |  |  | || |       | ||  || ||  |||   ||  | | |||||| |||||||  |||     |||                  
TGCTGCAGTGATAATTGGGACAGGTACAAATGCCTGCTATTTGGAACGGACAGATGCTATTATTAAGTGTCAGGGCCTTCTTACAACTTCTGGAGGCATGgtatc------ctttcttgattttctagtcatacattacctaacactgcatttttgagaataaagactgattcttctatttattat-ttgacttcatgtcatcttccattcgttag