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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAGTCATAAATGATCCGTTTATGCTCCACAGTATCATCTTGGTGTTTGCCAACAAACAGGACCTGgtatgtcttcattacttcttgattggtgttttttcggctgaatgagctaacatatataattatcttcatgagtaaggatgaaatcagagccaaataatgt...

Basic information

species Glycine max
transcript GLYMA12G02110.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G02110.1 (Glycine max), 5'ss of exon 5
lower sequence: AT5G17060.1 (Arabidopsis thaliana), 5'ss of exon 5
ACAGTCATAAATGATCCGTTTATGCTCCACAGTATCATCTTGGTGTTTGCCAACAAACAGGACCTGgtatgtcttcattacttcttgattggtgttttttcggctgaatgagctaaca--tatataattatcttcatgagtaaggatgaaatcagagccaaataatgt
    ||||||| || || || |||||  ||||||||||  |||||||||| |||||||||||| |||||  ||   |||   | ||| ||  ||||| ||     |  || ||| | |  |    ||||  |||| | | |  |   || || ||             
GAGATCATAAAAGACCCATTCATGCTAAACAGTATCATTCTGGTGTTTGCAAACAAACAGGACATGgtaattcgatattttcttttggtttttgtttgtttc-tcgtctgtgcttataattcctcaattcacttctttactctgctggatattag-------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192310498|gb|FG999199.1|FG999199
EST:     CGTTTATGCTCCACAGTATCATCTTGGTGTTTGCCAACAAACAGGACCTG                         AAAGGAGCAATGTCACCAAGGGAAATATGTGAAGGATTAGGTCTCTTTGAT
genomic: CGTTTATGCTCCACAGTATCATCTTGGTGTTTGCCAACAAACAGGACCTGgtatgtcttc ... tctttaccagAAAGGAGCAATGTCACCAAGGGAAATATGTGAAGGATTAGGTCTCTTTGAT
EST: gi|58017541|gb|CX704283.1|CX704283
EST:     CGTTTATGCTCCACAGTATCATCTTGGTGTTTGCCAACAAACAGGACCTG                         AAAGGAGCAATGTCACCAAGGGAAATATGTGAAGGATTAGGTCTCTTTGAT
genomic: CGTTTATGCTCCACAGTATCATCTTGGTGTTTGCCAACAAACAGGACCTGgtatgtcttc ... tctttaccagAAAGGAGCAATGTCACCAAGGGAAATATGTGAAGGATTAGGTCTCTTTGAT
EST: gi|58024666|gb|CX711407.1|CX711407
EST:     CGTTTATGCTCCACAGTATCATCTTGGTGTTTGCCAACAAACAGGACCTG                         AAAGGAGCAATGTCACCAAGGGAAATATGTGAAGGATTAGGTCTCTTTGAT
genomic: CGTTTATGCTCCACAGTATCATCTTGGTGTTTGCCAACAAACAGGACCTGgtatgtcttc ... tctttaccagAAAGGAGCAATGTCACCAAGGGAAATATGTGAAGGATTAGGTCTCTTTGAT
EST: gi|58017601|gb|CX704343.1|CX704343
EST:     CGTTTATGCTCCACAGTATCATCTTGGTGTTTGCCAACAAACAGGACCTG                         AAAGGAGCAATGTCACCAAGGGAAATATGTGAAGGATTAGGTCTCTTTGAT
genomic: CGTTTATGCTCCACAGTATCATCTTGGTGTTTGCCAACAAACAGGACCTGgtatgtcttc ... tctttaccagAAAGGAGCAATGTCACCAAGGGAAATATGTGAAGGATTAGGTCTCTTTGAT
EST: gi|151403387|gb|EV273197.1|EV273197
EST:     CGTTTATGCTCCACAGTATCATCTTGGTGTTTGCCAACAAACAGGACCTG                         AAAGGAGCAATGTCACCAAGGGAAATATGTGAAGGATTAGGTCTCTTTGAT
genomic: CGTTTATGCTCCACAGTATCATCTTGGTGTTTGCCAACAAACAGGACCTGgtatgtcttc ... tctttaccagAAAGGAGCAATGTCACCAAGGGAAATATGTGAAGGATTAGGTCTCTTTGAT
EST: gi|192330787|gb|FK022358.1|FK022358
EST:     CGTTTATGCTCCACAGTATCATCTTGGTGTTTGCCAACAAACAGGACCTG                         AAAGGAGCAATGTCACCAAGGGAAATATGTGAAGGATTAGGTCTCTTTGAT
genomic: CGTTTATGCTCCACAGTATCATCTTGGTGTTTGCCAACAAACAGGACCTGgtatgtcttc ... tctttaccagAAAGGAGCAATGTCACCAAGGGAAATATGTGAAGGATTAGGTCTCTTTGAT
EST: gi|192310499|gb|FG999200.1|FG999200
EST:     CGTTTATGCTCCACAGTATCATCTTGGTGTTTGCCAACAAACAGGACCTG                         AAAGGAGCAATGTCACCAAGGGAAATATGTGAAGGATTAGGTCTCTTTGAT
genomic: CGTTTATGCTCCACAGTATCATCTTGGTGTTTGCCAACAAACAGGACCTGgtatgtcttc ... tctttaccagAAAGGAGCAATGTCACCAAGGGAAATATGTGAAGGATTAGGTCTCTTTGAT