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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTTCCGCCGGAAGCCCAATTCCTTCCCCCACCCATTCTCCTAACATGTTCAACCAAAATCTTGTTCCTTCTTTTCACATCACTTCAGAGGCCCCAAAGGgtatatctctctctctcacattttaaaggcagcgaatttcagctgctcttgaattgaacttggtgcgtttctgggaaatggaatgaatttgttgagatttatgttatttgatttcag

Basic information

species Glycine max
transcript GLYMA12G01350.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151393229|gb|EV263104.1|EV263104
EST:     CAACCAAAATCTTGTTCCTTCTTTTCACATCACTTCAGAGGCCCCAAAGG                         AGAGTGGTTCAAGTTCTGCTCCAGCTAGTATTGCATCAGTTTCTGTTGGTC
genomic: CAACCAAAATCTTGTTCCTTCTTTTCACATCACTTCAGAGGCCCCAAAGGgtatatctct ... ttgatttcagAGAGTGGTTCAAGTTCTGCTCCAGCTAGTATTGCATCAGTTTCTGTTGGTC
EST: gi|208328757|gb|GE130881.1|GE130881
EST:     TCACTTCAGAGGCCCCAAAGG                         AGAGTGGTTCTAAGTTTCTTGTCTCCAGCTAGTATTGCATCAGTTTCTGTT
genomic: TCACTTCAGAGGCCCCAAAGGgtatatctct ... ttgatttcagAGAGTGGTTC-AAG-TTC-TG-CTCCAGCTAGTATTGCATCAGTTTCTGTT
EST: gi|207813437|gb|GD782936.1|GD782936
EST:     CAACCAAAATCTTGTTCCTTCTTTTCACATCACTTCAGAGGCCCCAAAGG                         AGAGTGGTTCAAGTTCTGCTCCAGCTAGTATTGCATCAGTTTCTGTTGGTC
genomic: CAACCAAAATCTTGTTCCTTCTTTTCACATCACTTCAGAGGCCCCAAAGGgtatatctct ... ttgatttcagAGAGTGGTTCAAGTTCTGCTCCAGCTAGTATTGCATCAGTTTCTGTTGGTC
EST: gi|27445790|gb|CA952913.1|CA952913
EST:     CTTCAGAGGCCCCAAAGG                         AGAGTGGTTCAAGTTCTGCTCCAGCTAGTATTGCATCAGTTTCTGTTGGTC
genomic: CTTCAGAGGCCCCAAAGGgtatatctct ... ttgatttcagAGAGTGGTTCAAGTTCTGCTCCAGCTAGTATTGCATCAGTTTCTGTTGGTC
EST: gi|20814980|gb|BQ299458.1|BQ299458
EST:     CAACCAAAATCTTGTTCCTTCTTTTCACATCACTTCAGAGGCCCCAAAGG                         AGAGTGGTTCAAGTTCTGCTCCAGCTAGTATTGCATCAGTTTCTGTTGGTC
genomic: CAACCAAAATCTTGTTCCTTCTTTTCACATCACTTCAGAGGCCCCAAAGGgtatatctct ... ttgatttcagAGAGTGGTTCAAGTTCTGCTCCAGCTAGTATTGCATCAGTTTCTGTTGGTC
EST: gi|193589941|gb|FK544297.1|FK544297
EST:     CAACCAAAATCTTGTTCCTTCTTTTCACATCACTTCAGAGGCCCCAAAGG                         AGAGTGGTTCAAGTTCTGCTCCAGCTAGTATTGCATCAGTTTCTGTTGGTC
genomic: CAACCAAAATCTTGTTCCTTCTTTTCACATCACTTCAGAGGCCCCAAAGGgtatatctct ... ttgatttcagAGAGTGGTTCAAGTTCTGCTCCAGCTAGTATTGCATCAGTTTCTGTTGGTC