1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TGTGGAGGAAAGAATTGGTGCAGCAGACCGGAGAAAGATGGATGGAAATGCTTTGTATCAGGAAGAAAAACTAGAGGAGGCTATGCAACAGTATGAAATGgttacacacttatgtttcttgtgctcttcttaataattcttcgctgttcttaatccatggaaatatcttctctttttattttgggttatttgacaaatttgtgattgtcttggttcttgtcag
species | Glycine max |
transcript | GLYMA12G01080.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CTATGCAACAGTATGAAATG GCCATTGCATATATGGGAGATGACTTCATGTTCCEST: gi|209705142|gb|BW653351.1|BW653351
genomic: CTATGCAACAGTATGAAATGgttacacact ... ttcttgtcagGCCATTGCATATATGGGAGATGACTTCATGTTCC
EST: CTTTGTATCAGGAAGAAAAACTAGAGGAGGCTATGCAACAGTATGAAATG GCCATTGCATATATGGGAGATGACTTCATGTTCCAGTTGTTTGGGAAGTATEST: gi|8825928|gb|BE209658.1|BE209658
genomic: CTTTGTATCAGGAAGAAAAACTAGAGGAGGCTATGCAACAGTATGAAATGgttacacact ... ttcttgtcagGCCATTGCATATATGGGAGATGACTTCATGTTCCAGTTGTTTGGGAAGTAT
EST: CTTTGTATCAGGAAGAAAAACTAGAGGAGGCTATGCAACAGTATGAAATG GCCATTGCATATATGGGAGATGACTTCATGTTCCAGTTGTTTGGGAAGTATEST: gi|13790842|gb|BG653433.1|BG653433
genomic: CTTTGTATCAGGAAGAAAAACTAGAGGAGGCTATGCAACAGTATGAAATGgttacacact ... ttcttgtcagGCCATTGCATATATGGGAGATGACTTCATGTTCCAGTTGTTTGGGAAGTAT
EST: TGTATCAGGAAGAAAAACTAGAGGAGGCTATGCAACAGTATGAAATG GCCATTGCATATATGGGAGATGACTTCATGTTCCAGTTGTTTGGGAAGTATEST: gi|207682946|gb|GD665401.1|GD665401
genomic: TGTATCAGGAAGAAAAACTAGAGGAGGCTATGCAACAGTATGAAATGgttacacact ... ttcttgtcagGCCATTGCATATATGGGAGATGACTTCATGTTCCAGTTGTTTGGGAAGTAT
EST: CTTTGTATCAGGAAGAAAAACTAGAGGAGGCTATGCAACAGTATGAAATG GCCATAGCATATATGGGAGATGACTTCATGTTCCAGTTGTTTGGGAAGTATEST: gi|298177353|gb|HO027134.1|HO027134
genomic: CTTTGTATCAGGAAGAAAAACTAGAGGAGGCTATGCAACAGTATGAAATGgttacacact ... ttcttgtcagGCCATTGCATATATGGGAGATGACTTCATGTTCCAGTTGTTTGGGAAGTAT
EST: CTTTGTATCAGGAAGAAAAACTAGAGGAGGCTATGCAACAGTATGAAACG GCCATTGCATATATGGGAGATGACCTCATGTTCCAGTTGTTTGGGAAGTATEST: gi|151410803|gb|EV280618.1|EV280618
genomic: CTTTGTATCAGGAAGAAAAACTAGAGGAGGCTATGCAACAGTATGAAATGgttacacact ... ttcttgtcagGCCATTGCATATATGGGAGATGACTTCATGTTCCAGTTGTTTGGGAAGTAT
EST: GTATCAGGAAGAAAAACTAGAGGAGGCTATGCAACAGTATGAAATG GCCATTGCATATATGGGAGATGACTTCATGTTCCAGTTGTTTGGGAAGTATEST: gi|192324546|gb|FK018702.1|FK018702
genomic: GTATCAGGAAGAAAAACTAGAGGAGGCTATGCAACAGTATGAAATGgttacacact ... ttcttgtcagGCCATTGCATATATGGGAGATGACTTCATGTTCCAGTTGTTTGGGAAGTAT
EST: CTTTGTATCACGAAGAAAA-CTAGAGGAGGCTATGCAACAGTATGAAATG GCCATTGCATATATGGGAGATGACTT
genomic: CTTTGTATCAGGAAGAAAAACTAGAGGAGGCTATGCAACAGTATGAAATGgttacacact ... ttcttgtcagGCCATTGCATATATGGGAGATGACTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTGGAGGAAAGAATTGGTGCAGCAGACCGGAGAAAGATGGATGGAAATGCTTTGTATCAGGAAGAAAAACTAGAGGAGGCTATGCAACAGTATGAAATGgttacacacttatgtttcttgtgctcttcttaataattcttcgctgttcttaatccatggaaatatcttctctttttattttgggttatttgacaaatttgtgattgtcttggttcttgtcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG