1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CATGTTCCTTATAAAGCATCTCAAAGTACTTCACCCTTCTGGTATTCTATCAAGAGAGCTTCAGCACACATCATTGTTTTGGCCTCATATTCAGCGTATGgtaatgctagatgtcttttgcatgatacatatttatgtagagagcactggctgattctatgatttcagacaaacacgattctgtttgtaataatttcacc...
species | Glycine max |
transcript | GLYMA12G01000.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CAAGAGAGCTTCAGCACACATCATTGTTTTGGCCTCATATTCAGCGTATG GAAAATATACACCACAATATAAATGGCTTGAAAAGGAGCTACCGAAAGTTAEST: gi|193347091|gb|FK310961.1|FK310961
genomic: CAAGAGAGCTTCAGCACACATCATTGTTTTGGCCTCATATTCAGCGTATGgtaatgctag ... attttctcagGAAAATATACACCACAATATAAATGGCTTGAAAAGGAGCTACCGAAAGTTA
EST: AGAGAGCTTCAGCACACATCATTGTTTTGGCCTCATATTCAGCGTAATAG GAAAATATACACCACAATATAAATGGCTTGAAAAGGAGCTACCGAAAGTTEST: gi|193411449|gb|FK378542.1|FK378542
genomic: AGAGAGCTTCAGCACACATCATTGTTTTGGCCTCATATTCAGCGTA-T-Ggtaatgctag ... attttctcagGAAAATATACACCACAATATAAATGGCTTGAAAAGGAGCTACCGAAAGTT
EST: CAAGAGAGCTTCAGCACACATCATTGTTTTGGCCTCATATTCAGCGTATG GAAAATATACACCACAATATAAATGGCTTGAAAAGGAGCTACCGAAAGTTA
genomic: CAAGAGAGCTTCAGCACACATCATTGTTTTGGCCTCATATTCAGCGTATGgtaatgctag ... attttctcagGAAAATATACACCACAATATAAATGGCTTGAAAAGGAGCTACCGAAAGTTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATGTTCCTTATAAAGCATCTCAAAGTACTTCACCCTTCTGGTATTCTATCAAGAGAGCTTCAGCACACATCATTGTTTTGGCCTCATATTCAGCGTATGgtaatgctagatgtcttttgcatgatacatatttatgtagagagcactggctgattctatgatttcagacaaacacgattctgtttgtaataatttcacc
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT