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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCACTCTTCAGTCCACATATCTAGTTGCTCATGAACCTGATGACGATAATATTCTTCGAACTCGGACTTACGATATCAGCATCACgtaagatgagtttcaatataaattttcttgactgccattttatgcatgctactctctactttgaaccctccggcctccactaggtttattaaatctctct...

Basic information

species Glycine max
transcript GLYMA12G00830.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G00830.1 (Glycine max), 5'ss of exon 5
lower sequence: AT5G61500.1 (Arabidopsis thaliana), 5'ss of exon 5
GCCACTCTTCAGTCCACATATCTAGTTGCTCATGAACCTGATGACGATAATATTCTTCGAACTCGGACTTACGATATCAGCATCACgtaaga----tgagtttcaatataa-attttcttgactgccattttatgcatgctactctct-actttgaaccctccggcctccactaggtttattaaatctctct---------
|| ||||||||||| || ||||| || ||||||||||||||||||||||| ||||| ||||||||||| || ||| ||||||| |||||||      | |||||   | |   |  |  ||  |      || |  ||    || ||| || ||      ||| |     |  |   |||| || |||| ||         
GCAACTCTTCAGTCAACTTATCTTGTGGCTCATGAACCTGATGACGATAACATTCTCCGAACTCGGACATATGATCTCAGCATAACgtaagcatcccgggtttcttcaaagtgtagtactgcgttttgacttttagatatagctttcttacatttgg---tccagtagtaagcaaacttat-aattctcactttggttcag

upper sequence: GLYMA12G00830.1 (Glycine max), 5'ss of exon 5
lower sequence: EFJ14759 (Selaginella moellendorffii), 5'ss of exon 5
GCCACTCTTCAGTCCACATATCTAGTTGCTCATGAACCTGATGACGATAATATTCTTCGAACTCGGACTTACGATATCAGCATCACgtaagatgagtttcaatataaattttcttgactgccattttatgcatgctactctctactttgaaccctccggcctccactaggtttattaaatctctct
 |  |  | ||  |  | |||||| | |||||||| || |||||  | ||||| || || |||||||| |||||||| ||||||||||||| | |  |||    || | ||||  |        |||    | | ||||| ||||                                         
ACTGCAGTACATGCACCCTATCTAATAGCTCATGAGCCGGATGATAACAATATCCTGCGTACTCGGACCTACGATATAAGCATCACgtaagctaacgttc----tagagtttcaagttcagtccttt---taaggtactcactacag---------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31312555|gb|CD397758.1|CD397758
EST:     CCTGATGACGATAATATTCTTCGAACTCGGACTTACGATGTCAGCATCAC                         GTATGATAAATATTATCNAACACCACGAGTATGGCTTACTGGGTATGACGA
genomic: CCTGATGACGATAATATTCTTCGAACTCGGACTTACGATATCAGCATCACgtaagatgag ... catttcgcagGTATGATAAATATTATCAAACACCACGAGTATGGCTTACTGGGTATGACGA
EST: gi|192330861|gb|FK021620.1|FK021620
EST:     GACTTACGATATCAGCATCAC                         GTATGATAAATATTATCAAACACCACGAGTATGGCTTACTGGGTATGACGA
genomic: GACTTACGATATCAGCATCACgtaagatgag ... catttcgcagGTATGATAAATATTATCAAACACCACGAGTATGGCTTACTGGGTATGACGA
EST: gi|193463512|gb|FK427436.1|FK427436
EST:     TTCGAACTCGGACTTACGATATCAGCATCAC                         GTATGATAAATATTATCAAACACCACGAGTATGGCTTACTGGGTATGACGA
genomic: TTCGAACTCGGACTTACGATATCAGCATCACgtaagatgag ... catttcgcagGTATGATAAATATTATCAAACACCACGAGTATGGCTTACTGGGTATGACGA
EST: gi|192330860|gb|FK021619.1|FK021619
EST:     CCTGATGACGATAATATTCTTCGAACTCGGACTTACGATATCAGCATCAC                         GTATGATAAATATTATCAAACACCACGAGTATGG
genomic: CCTGATGACGATAATATTCTTCGAACTCGGACTTACGATATCAGCATCACgtaagatgag ... catttcgcagGTATGATAAATATTATCAAACACCACGAGTATGG
EST: gi|16104976|gb|BI892716.1|BI892716
EST:     CCTGATGACGATAATATTCTTCGAACTCGGACTTACGATATCAGCATCAC                         GTATGATAAATATTATCAAACACCACGAGTAT
genomic: CCTGATGACGATAATATTCTTCGAACTCGGACTTACGATATCAGCATCACgtaagatgag ... catttcgcagGTATGATAAATATTATCAAACACCACGAGTAT
EST: gi|151395552|gb|EV265429.1|EV265429
EST:     CCTGATGACGATAATATTCTTCGAACTCGGACTTACGATATCAGCATCAC                         GTATGATAAATATTATCAAACACCACGAGTATGGCTTACTGGGTATGACGA
genomic: CCTGATGACGATAATATTCTTCGAACTCGGACTTACGATATCAGCATCACgtaagatgag ... catttcgcagGTATGATAAATATTATCAAACACCACGAGTATGGCTTACTGGGTATGACGA
EST: gi|192324977|gb|FK016133.1|FK016133
EST:     CCTGATGACGATAATATTCTTCGAACTCGGACTTACGATATCAGCATCAC                         GTATGATAAATATTATCAAACACCACGAGTATGGCTTACTGGGTATGACGA
genomic: CCTGATGACGATAATATTCTTCGAACTCGGACTTACGATATCAGCATCACgtaagatgag ... catttcgcagGTATGATAAATATTATCAAACACCACGAGTATGGCTTACTGGGTATGACGA
EST: gi|151404711|gb|EV274525.1|EV274525
EST:     CCTGATGACGATAATATTCTTCGAACTCGGACTTACGATATCAGCATCAC                         GTATGATAAATATTATCAAACACCACGAGTATGGCTTACTGGGT
genomic: CCTGATGACGATAATATTCTTCGAACTCGGACTTACGATATCAGCATCACgtaagatgag ... catttcgcagGTATGATAAATATTATCAAACACCACGAGTATGGCTTACTGGGT