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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTCTATTATGCTGGTAGTCATGGAATGGACATCATTGGGCCTGTTAGACAATCTGTATCTGATAATCACCCAAATTGCATTAGGTCTACAGACAAGCAGgtactgggagttgaaagtttctatctgtgatctgttttatgaatatctctctcactttctgttctctttcttgaattattttattaaatggcttctgttattatctttaaatttacag

Basic information

species Glycine max
transcript GLYMA12G00790.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G00790.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os10g40550.1 (Oryza sativa), 5'ss of exon 6
ACTCTATTATGCTGGTAGTCATGGAATGGACATCATTGGGCCTGTTAGACAATCTGTATC---TGATAATCACCCAAATTGCATTAGGTCTACAGACAAGCAGgtactgggagttgaaagtttctatctgtgatctgttttatgaatatctctctcactttctgttct-ctttcttgaattattttattaaatggcttctgttattatctttaaatttacag
    ||||| ||||| |||||||||||||| ||||| |||||||||||  | ||||  ||   || | | ||     | || || ||||| || ||     |||| |         ||    | | |   |||| | ||  |   | |  | |||| |||          | |  | | |||||   ||   |||||  |                      
---GTATTACGCTGGAAGTCATGGAATGGATATCATGGGGCCTGTTAGGAAGTCTGATTCGAGTGGTCAGCATGTGGAATGTATCAGGTCCACTGATTCAGAGgtgc---------aacagctttgt---tgattttttccacagacaaatttctctcttgtgacaaaattctaattagttattgctttt--tggctcatag--------------------

upper sequence: GLYMA12G00790.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os07g30160.1 (Oryza sativa), 5'ss of exon 5
ACTCTATTATGCTGGTAGTCATGGAATGGACATCATTGGGCCTGTTAGACAATCTGTATC---TGATAATCACCCAAATTGCATTAGGTCTACAGACAAGCAGgtactgggagttgaaagtttctatctgtgatctgttttatgaatatctctctcactttctgttctctttcttgaattat-tttattaaatggcttctgttattatctttaaa---tttacag
    || ||||||||||| ||||||||||||||||| || || ||| |  ||  ||  ||   |  ||| ||    |  | |||||  || |     ||||||||   | ||| |     |||  |  |  |    |  | ||  || | | ||  | |||  || |    | |   |   | ||| ||   ||  ||   ||  | | || |||   |||  ||
---GTACTATGCTGGTAGCCATGGAATGGACATCATGGGTCCAGTTGGGGAACATGATTCAGTTACTAACCATAGGAGCTCCATTAACTCAAATAGAAAGCAGgtgtggagagctc----tttacagttcagccaagcataat--atttgtttccaaattttagtgcaaaatatgatacagtatttgttttttgaattgaattgatcttttcaaacggtttttag

upper sequence: GLYMA12G00790.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv16s0022g00660.t01 (Vitis vinifera), 5'ss of exon 4
ACTCTATTATGCTGGTAGTCATGGAATGGACATCATTGGGCCTGTTAGACAATCTGTATCTGATAATCACCCAAATTGCATTAGGTCTACAGACAAGCAGgtactgggagttgaaagtttctatctgtgatctgttt-tatgaatat-----ctctctcactttctgttctctttcttgaattat-tttattaaatggcttctgttattatctt-taaatttacag
 ||||| || |||||||||||||| ||||||||||| || ||||| ||||| ||  | ||| || | || |||||||| |||||||  || |||||||||||||       |  ||  |  |     |||  | | | |||  ||||     |||| |||  |  | |  | ||| ||   || |  ||||| |     || | ||||| |||| | ||| ||   
GCTCTACTACGCTGGTAGTCATGGGATGGACATCATGGGCCCTGTCAGACACTCCATTTCTAATGACCATCCAAATTGTATTAGGTTAACTGACAAGCAGgtaccctagcctagaaactctttctcatgaaatatatatatatatatactatctctttcatatgttatgttatttatttggttttacttattcacccttttatattattttcttatgaatgtag--

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13125626|gb|BG316196.1|BG316196
EST:     AATCTGTATCTGATAATCACCCAAATTGCATTAGGTCTACAGACAAGCAG                         GGTAAGGAAGTAAATTTATTCCAACCTGCTGCTGAATTTCTGCCCATGATT
genomic: AATCTGTATCTGATAATCACCCAAATTGCATTAGGTCTACAGACAAGCAGgtactgggag ... aaatttacagGGTAAGGAAGTAAATTTATTCCAACCTGCTGCTGAATTTCTGCCCATGATT
EST: gi|18733283|gb|BM527521.1|BM527521
EST:     AATCTGTATCTGATAATCACCCAAATTGCATTANGTCTACAGACAAGCAG                         GGTAANGAAGTAAATTTATTCCAACCT
genomic: AATCTGTATCTGATAATCACCCAAATTGCATTAGGTCTACAGACAAGCAGgtactgggag ... aaatttacagGGTAAGGAAGTAAATTTATTCCAACCT
EST: gi|12774838|gb|BG239704.1|BG239704
EST:     AATCTGTATCTGATAATCACCCAAATTGCATTAGGTCTACAGACAAGCAG                         GGTAAGGAAGTAAATTTATTCCAACCTGCTGCTGAATTTCTGCCCATGATT
genomic: AATCTGTATCTGATAATCACCCAAATTGCATTAGGTCTACAGACAAGCAGgtactgggag ... aaatttacagGGTAAGGAAGTAAATTTATTCCAACCTGCTGCTGAATTTCTGCCCATGATT
EST: gi|10234926|gb|BE803814.1|BE803814
EST:     AATCTGTATCTGATAATCACCCAAATTGCATTAGGTCTACAGACAAGCAG                         GGTAAGGAATTAAATTTATTCCAACCTGCTGCTGAATTTCTGCCCATGATT
genomic: AATCTGTATCTGATAATCACCCAAATTGCATTAGGTCTACAGACAAGCAGgtactgggag ... aaatttacagGGTAAGGAAGTAAATTTATTCCAACCTGCTGCTGAATTTCTGCCCATGATT