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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGGAGCTTAAGCTTGGACTAGGGGGCACATCTTATGCAGATTTTATTGAAAGTTTACATCTTCCTATGCAACTGAGgtagcatcttttcctgatctgctgtttccttttatacttctcagaaggagcattgaaaagtagtgcaatattcccagaatctgatagtattgaagtttta...

Basic information

species Glycine max
transcript GLYMA12G00600.3
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120491443|gb|EH219610.1|EH219610
EST:     ACATCTTATGCAGATGTTATTGAAAGGTTACATCTTCCTATGCAACTGAG                         TCAGGTTGATCCCATAGTGGCATCATTCTCTGGAGGAGCAGTTGGAGTAAT
genomic: ACATCTTATGCAGATTTTATTGAAAGTTTACATCTTCCTATGCAACTGAGgtagcatctt ... gatattctagTCAGGTTGATCCCATAGTGGCATCATTCTCTGGAGGAGCAGTTGGAGTAAT
EST: gi|7924908|gb|AW830934.1|AW830934
EST:     ACATCTTATGCAGATTTTATTGAAAGTTTACATCTTCCTATGCAACTGAG                         TCAGGTTGATCCCATAGTGGCATCATTCTCTGGAGGAGCAGTTGGAGTAAT
genomic: ACATCTTATGCAGATTTTATTGAAAGTTTACATCTTCCTATGCAACTGAGgtagcatctt ... gatattctagTCAGGTTGATCCCATAGTGGCATCATTCTCTGGAGGAGCAGTTGGAGTAAT
EST: gi|19269603|gb|BM885859.1|BM885859
EST:     ACATCTTATGCAGATTTTATTGAAAGTTTACATCTTCCTATGCAACTGAG                         TCAGGTTGATCCCATAGTGGCATCATTCTCTGGAGGAGCAGTTGGAGTAAT
genomic: ACATCTTATGCAGATTTTATTGAAAGTTTACATCTTCCTATGCAACTGAGgtagcatctt ... gatattctagTCAGGTTGATCCCATAGTGGCATCATTCTCTGGAGGAGCAGTTGGAGTAAT
EST: gi|33389909|gb|CA853116.1|CA853116
EST:     ACATCTTATGCAGATTTTATTGAAAGTTTACATCTTCCTATGCAACTGAG                         TCAGGTTGATCCCATAGTGGCATCATTCTCTGGAGG
genomic: ACATCTTATGCAGATTTTATTGAAAGTTTACATCTTCCTATGCAACTGAGgtagcatctt ... gatattctagTCAGGTTGATCCCATAGTGGCATCATTCTCTGGAGG
EST: gi|192307758|gb|FK001702.1|FK001702
EST:     ACATCTTATGCAGATTTTATTGAAAGTTTACATCTTCCTATGCAACTGAG                         TCAGGTTGATCCCATAGTGGCATCATTTTCTGGAGGAGCAGTTGGAGTAAT
genomic: ACATCTTATGCAGATTTTATTGAAAGTTTACATCTTCCTATGCAACTGAGgtagcatctt ... gatattctagTCAGGTTGATCCCATAGTGGCATCATTCTCTGGAGGAGCAGTTGGAGTAAT
EST: gi|22525484|gb|BU084295.1|BU084295
EST:     ACATCTTATGCAGATTTTATTGAAAGTTTACATCTTCCTATGCAACT--G                         --AGGTTGATCCCATAGTGGCATCATTCTCTGGAGGAGCAGTTGGAGTAAT
genomic: ACATCTTATGCAGATTTTATTGAAAGTTTACATCTTCCTATGCAACTGAGgtagcatctt ... gatattctagTCAGGTTGATCCCATAGTGGCATCATTCTCTGGAGGAGCAGTTGGAGTAAT
EST: gi|33389270|gb|CA852477.1|CA852477
EST:     ACATCTTATGCAGATTTTATTGAAAGTTTACATCTTCCTATGCAACTGAG                         TCAGGTTGATCCCATAGTGGCATCATTCTCTGGAGGAGCAGTTGGAGTAAT
genomic: ACATCTTATGCAGATTTTATTGAAAGTTTACATCTTCCTATGCAACTGAGgtagcatctt ... gatattctagTCAGGTTGATCCCATAGTGGCATCATTCTCTGGAGGAGCAGTTGGAGTAAT
EST: gi|193623839|gb|FK575133.1|FK575133
EST:     CATCTTATGCAGTATTTTATTGAAAGTTTACATCTTCCTATGCAACTGAG                         TCAGGTTGATCCCATAGTGGCATCATTCTCTGGAGGAGCAGTTGGAGTAAT
genomic: CATCTTATGCAG-ATTTTATTGAAAGTTTACATCTTCCTATGCAACTGAGgtagcatctt ... gatattctagTCAGGTTGATCCCATAGTGGCATCATTCTCTGGAGGAGCAGTTGGAGTAAT
EST: gi|120491318|gb|EH219485.1|EH219485
EST:     ACATCTTATGCAGATTTTATTGAAAGTTTACATCTTCCTATGCAACTGAG                         TCAGGTTGATCCCATAGTGGCATCATTCTCTGGAGGAGCAGTTGGAGTAAT
genomic: ACATCTTATGCAGATTTTATTGAAAGTTTACATCTTCCTATGCAACTGAGgtagcatctt ... gatattctagTCAGGTTGATCCCATAGTGGCATCATTCTCTGGAGGAGCAGTTGGAGTAAT
EST: gi|192307757|gb|FK001701.1|FK001701
EST:     ACATCTTATGCAGATTTTATTGAAAGTTTACATCTTCCTATGCAACTGAG                         TCAGGTTGATCCCATAGTGGCATCATTCTCTGGAGGAGCAGTTGGAGTAAT
genomic: ACATCTTATGCAGATTTTATTGAAAGTTTACATCTTCCTATGCAACTGAGgtagcatctt ... gatattctagTCAGGTTGATCCCATAGTGGCATCATTCTCTGGAGGAGCAGTTGGAGTAAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTGGAGCTTAAGCTTGGACTAGGGGGCACATCTTATGCAGATTTTATTGAAAGTTTACATCTTCCTATGCAACTGAGgtagcatcttttcctgatctgctgtttccttttatacttctcagaaggagcattgaaaagtagtgcaatattcccagaatctgatagtattgaagtttta

- - - - - - - - - - - - - - - - - - GCAGAT