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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATGTTAGTGAGTACACTTGCTAAGTACCGATCAAGACCCAGGATTTATATTGGTTGCATGAAATCTGGTCCTGTTCTATATCAAAAgtgaggtttctctttaattagtcattcattgttgaaggaaatattaatgttgttttgtaaatgaagtaatatctcattttaatttgtgtgtgtggcag

Basic information

species Glycine max
transcript GLYMA12G00530.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G00530.1 (Glycine max), 5'ss of exon 5
lower sequence: AT1G33430.1 (Arabidopsis thaliana), 5'ss of exon 5
------------GTATGTTAGTGAGTACACTTGCTAAGTACCGATCAAGACCCAGGATTTATATTGGTTGCATGAAATCTGGTCCTGTTCTATATCAAAAgtgaggtttctctttaattagtcattcattgttgaaggaaatattaatgttgttttgtaaatgaagtaatatctcattttaatttgtgtgtgtggcag
            ||||| | || |  |||||||| |  || | ||||||||| |||||||| ||||| |||||||| |||||||||||||| |  ||||||| || ||  |    ||  | |       | | ||   |||| | ||      |  | |  |   | ||| | |                        
ATGTCAATTTAGGTATGCTTGTTACAACACTTGCGAGATATCAATCAAGACCAAGGATTTACATTGGATGCATGAAGTCTGGTCCTGTTCTTTCACAAAAgtaagcttctttacaaaaaatttgaaacctttggataaaaatctgaactaaagtaaggatttttggaaatgtatag----------------------