Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAGGTTTGGATGTCGATGCTCTGTACATTTCCCATGTCCAGGTTAATCAAGCACAGAAGCAAAGGCGTCGTACCTACAGAGCTCATGGAAGAATCAACCgtatgtcactgattttgttgatattgtcgacttaatggactactattacatgcttttgttgagagagtcctttttttttgcag

Basic information

species Glycine max
transcript GLYMA11G37160.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G37160.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv01s0010g03380.t01 (Vitis vinifera), 5'ss of exon 4
AAAGGTTTGGATGTCGATGCTCTGTACATTTCCCATGTCCAGGTTAATCAAGCACAGAAGCAAAGGCGTCGTACCTACAGAGCTCATGGAAGAATCAACCgtatgtcactgattttgttgatattg--tcgacttaatggactactattacatgcttttgttgagagagtcctttttttttgcag
|||||| ||||||| ||| | || ||||| || ||  |||| || || || |||||||| |||||||| || || ||| | |||||||||||||||||||||| ||   |    ||    || | |  |     ||||||  |  | |   |    ||    |  |   ||  ||| ||| ||||
AAAGGTCTGGATGTTGATTCACTCTACATATCTCACATCCAAGTGAACCAGGCACAGAAACAAAGGCGCCGCACATACCGGGCTCATGGAAGAATCAACCgtaagtttgtttcctttcaaatctagcatttgtgtaatgg-ttgttttcctaaatgttaacaggaaccttctatttgtttggcag

upper sequence: GLYMA11G37160.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv01s0010g03370.t01 (Vitis vinifera), 5'ss of exon 6
AAAGGTTTGGATGTCGATGCTCTGTACATTTCCCATGTCCAGGTTAATCAAGCACAGAAGCAAAGGCGTCGTACCTACAGAGCTCATGGAAGAATCAACCgtatgtcactgattttgttgatattgtcgacttaatggactactattacatgcttttgttgagagagtcctttttttttg-cag
|||||| ||||||| ||| | || ||||| || ||  |||| || || || |||||||| |||||||| || || ||| | ||||||||||||||||| |||||||   |  |  | |  |  || ||   |   |    |  | || |    | ||| |  |||  | || ||| |||| |||
AAAGGTCTGGATGTTGATTCACTCTACATATCTCACATCCAAGTGAACCAGGCACAGAAACAAAGGCGCCGCACATACCGTGCTCATGGAAGAATCAATCgtatgtttgtt-tcctttcaaatttatcttttgtgtatggtcgttttcctaaatgttgataggagccttctatttgtttggcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209723027|gb|BW668873.1|BW668873
EST:     AGCACAGAAGCAAAGGCGTCGTACCTACAGAGCTCATGGAAGAATCAACC                         CTTACATGTCATCTCCATGCCACATTGAGCTGATATTGTCTGAGAAGGAAG
genomic: AGCACAGAAGCAAAGGCGTCGTACCTACAGAGCTCATGGAAGAATCAACCgtatgtcact ... ttttttgcagCTTACATGTCATCTCCATGCCACATTGAGCTGATATTGTCTGAGAAGGAAG
EST: gi|192334008|gb|FK024821.1|FK024821
EST:     AGCACAGAAGCAAAGGCGTCGTACCTACAGAGCTCATGGAAGAATCAACC                         CTTACATGTCATCTCCATGCCACATTGAGCTGATATTGTCTGAGAAGGAAG
genomic: AGCACAGAAGCAAAGGCGTCGTACCTACAGAGCTCATGGAAGAATCAACCgtatgtcact ... ttttttgcagCTTACATGTCATCTCCATGCCACATTGAGCTGATATTGTCTGAGAAGGAAG
EST: gi|209723028|gb|BW668874.1|BW668874
EST:     AGCACAGAAGCAAAGGCGTCGTACCTACAGAGCTCATGGAAGAATCAACC                         CTTACATGTCATCTCCATGCCACATTGAGCTGATATTGTCTGAGAAGGAAG
genomic: AGCACAGAAGCAAAGGCGTCGTACCTACAGAGCTCATGGAAGAATCAACCgtatgtcact ... ttttttgcagCTTACATGTCATCTCCATGCCACATTGAGCTGATATTGTCTGAGAAGGAAG
EST: gi|214009864|gb|DB990363.1|DB990363
EST:     AGCACAGAAGCAAAGGCGTCGTACCTACAGAGCTCATGGAAGAATCAACC                         CTTACATGTCATCTCCATGCCACATTGAGCTGATATTGTCTGAGAAGGAAG
genomic: AGCACAGAAGCAAAGGCGTCGTACCTACAGAGCTCATGGAAGAATCAACCgtatgtcact ... ttttttgcagCTTACATGTCATCTCCATGCCACATTGAGCTGATATTGTCTGAGAAGGAAG
EST: gi|214004051|gb|DB984957.1|DB984957
EST:     AGCACAGAAGCAAAGGCGTCGTACCTACAGAGCTCATGGAAGAATCAACC                         CTTACATGTCATCTCCATGCCACATTGAGCTGATATTGTCTGAGAAGGAAG
genomic: AGCACAGAAGCAAAGGCGTCGTACCTACAGAGCTCATGGAAGAATCAACCgtatgtcact ... ttttttgcagCTTACATGTCATCTCCATGCCACATTGAGCTGATATTGTCTGAGAAGGAAG
EST: gi|58018377|gb|CX705119.1|CX705119
EST:     AGCACAGAAGCAAAGGCGTCGTACCTACAGAGCTCATGGAAGAATCAACC                         CTTACATGTCATCTCCATGCCACATTGAGCTGATATTGTCTGAGAAGGAAG
genomic: AGCACAGAAGCAAAGGCGTCGTACCTACAGAGCTCATGGAAGAATCAACCgtatgtcact ... ttttttgcagCTTACATGTCATCTCCATGCCACATTGAGCTGATATTGTCTGAGAAGGAAG
EST: gi|209707521|gb|BW664980.1|BW664980
EST:     AGCACAGAAGCAAAGGCGTCGTACCTACAGAGCTCATGGAAGAATCAACC                         CTTACATGTCATCTCCATGCCACATTGAGCTGATATTGTCTGAGAAGGAAG
genomic: AGCACAGAAGCAAAGGCGTCGTACCTACAGAGCTCATGGAAGAATCAACCgtatgtcact ... ttttttgcagCTTACATGTCATCTCCATGCCACATTGAGCTGATATTGTCTGAGAAGGAAG
EST: gi|192299836|gb|FG990073.1|FG990073
EST:     AGCACAGAAGCAAAGGCGTCGTACCTACAGAGCTCATGGAAGAATCAACC                         CTTACATGTCATCTCCATGCCACATTGAGCTGATATTGTCTGAGAAGGAAG
genomic: AGCACAGAAGCAAAGGCGTCGTACCTACAGAGCTCATGGAAGAATCAACCgtatgtcact ... ttttttgcagCTTACATGTCATCTCCATGCCACATTGAGCTGATATTGTCTGAGAAGGAAG
EST: gi|15285877|gb|BI469768.1|BI469768
EST:     AGCACAGAAGCAAAGGCGTCGTACCTACAGAGCTCATGGAAGAATCAACC                         CTTACATGTCATCTCCATGCCACATTGAGCTGATATTGTCTGAGAAGGAAG
genomic: AGCACAGAAGCAAAGGCGTCGTACCTACAGAGCTCATGGAAGAATCAACCgtatgtcact ... ttttttgcagCTTACATGTCATCTCCATGCCACATTGAGCTGATATTGTCTGAGAAGGAAG
EST: gi|31463467|gb|CD405495.1|CD405495
EST:     AGCACAGAAGCAAAGGCGTCGTACCTACAGAGCTCATGGAAGAATCAACC                         CTTACATGTCATCTCCATGCCACATTGAGCTGATATTGTCTGAGAAGGAAG
genomic: AGCACAGAAGCAAAGGCGTCGTACCTACAGAGCTCATGGAAGAATCAACCgtatgtcact ... ttttttgcagCTTACATGTCATCTCCATGCCACATTGAGCTGATATTGTCTGAGAAGGAAG
EST: gi|9564167|gb|BE473676.1|BE473676
EST:     AGCACAGAAGCAAAGGCGTCGTACCTACAGAGCTCATGGAAGAATCAACC                         CTTACATGTCATCTCCATGCCACATTGAGCTGATATTGTCTGAGAAGGAAG
genomic: AGCACAGAAGCAAAGGCGTCGTACCTACAGAGCTCATGGAAGAATCAACCgtatgtcact ... ttttttgcagCTTACATGTCATCTCCATGCCACATTGAGCTGATATTGTCTGAGAAGGAAG
EST: gi|57575590|gb|CX548565.1|CX548565
EST:     AGCACAGAAGCAAAGGCGTCGTACCTACAGAGCTCATGGAAGAATCAACC                         CTTACATGTCATCTCCATGCCACATTGAGCTGATATTGTCTGAGAAGGAAG
genomic: AGCACAGAAGCAAAGGCGTCGTACCTACAGAGCTCATGGAAGAATCAACCgtatgtcact ... ttttttgcagCTTACATGTCATCTCCATGCCACATTGAGCTGATATTGTCTGAGAAGGAAG
EST: gi|214007657|gb|DB987416.1|DB987416
EST:     AGCACAGAAGCAAAGGCGTCGTACCTACAGAGCTCATGGAAGAATCAACC                         CTTACATGTCATCTCCATGCCACATTGAGCTGATATTGTCTGAGAAGGAAG
genomic: AGCACAGAAGCAAAGGCGTCGTACCTACAGAGCTCATGGAAGAATCAACCgtatgtcact ... ttttttgcagCTTACATGTCATCTCCATGCCACATTGAGCTGATATTGTCTGAGAAGGAAG
EST: gi|209709086|gb|BW658802.1|BW658802
EST:     AGCACAGAAGCAAAGGCGTCGTACCTACAGAGCTCATGGAAGAATCAACC                         CTTACATGTCATCTCCATGCCACATTGAGCTGATATTGTCTGAGAAGGAAG
genomic: AGCACAGAAGCAAAGGCGTCGTACCTACAGAGCTCATGGAAGAATCAACCgtatgtcact ... ttttttgcagCTTACATGTCATCTCCATGCCACATTGAGCTGATATTGTCTGAGAAGGAAG
EST: gi|213620278|gb|DB961423.1|DB961423
EST:     AGCACAGAAGCAAAGGCGTCGTACCTACAGAGCTCATGGAAGAATCAACC                         CTTACATGTCATCTCCATGCCACATTGAGCTGATATTGTCTGAGAAGGAAG
genomic: AGCACAGAAGCAAAGGCGTCGTACCTACAGAGCTCATGGAAGAATCAACCgtatgtcact ... ttttttgcagCTTACATGTCATCTCCATGCCACATTGAGCTGATATTGTCTGAGAAGGAAG
EST: gi|214007728|gb|DB986094.1|DB986094
EST:     AGCACAGAAGCAAAGGCGTCGTACCTACAGAGCTCATGGAAGAATCAACC                         CTTACATGTCATCTCCATGCCACATTGAGCTGATATTGTCTGAGAAGGAAG
genomic: AGCACAGAAGCAAAGGCGTCGTACCTACAGAGCTCATGGAAGAATCAACCgtatgtcact ... ttttttgcagCTTACATGTCATCTCCATGCCACATTGAGCTGATATTGTCTGAGAAGGAAG
EST: gi|192334007|gb|FK024820.1|FK024820
EST:     AGCACAGAAGCAAAGGCGTCGTACCTACAGAGCTCATGGAAGAATCAACC                         CTTACATGTCATCTCCATGCCACATTGAGCTGATATTGTCTGAGAAGGAAG
genomic: AGCACAGAAGCAAAGGCGTCGTACCTACAGAGCTCATGGAAGAATCAACCgtatgtcact ... ttttttgcagCTTACATGTCATCTCCATGCCACATTGAGCTGATATTGTCTGAGAAGGAAG
EST: gi|58021552|gb|CX708293.1|CX708293
EST:     AGCACAGAAGCAAAGGCGTCGTACCTACAGAGCTCATGGAAGAATCAACC                         CTTACATGTCATCTCCATGCCACATTGAGCTGATATTGTCTGAGAAGGAAG
genomic: AGCACAGAAGCAAAGGCGTCGTACCTACAGAGCTCATGGAAGAATCAACCgtatgtcact ... ttttttgcagCTTACATGTCATCTCCATGCCACATTGAGCTGATATTGTCTGAGAAGGAAG
EST: gi|213618470|gb|DB967707.1|DB967707
EST:     AGCACAGAAGCAAAGGCGTCGTACCTACAGAGCTCATGGAAGAATCAACC                         CTTACATGTCATCTCCATGCCACATTGAGCTGATATTGTCTGAGAAGGAAG
genomic: AGCACAGAAGCAAAGGCGTCGTACCTACAGAGCTCATGGAAGAATCAACCgtatgtcact ... ttttttgcagCTTACATGTCATCTCCATGCCACATTGAGCTGATATTGTCTGAGAAGGAAG
EST: gi|213593183|gb|DB983415.1|DB983415
EST:     AGCACAGAAGCAAAGGCGTCGTACCTACAGAGCTCATGGAAGAATCAACC                         CTTACATGTCATCTCCATGCCACATTGAGCTGATATTGTCTGAGAAGGAAG
genomic: AGCACAGAAGCAAAGGCGTCGTACCTACAGAGCTCATGGAAGAATCAACCgtatgtcact ... ttttttgcagCTTACATGTCATCTCCATGCCACATTGAGCTGATATTGTCTGAGAAGGAAG
EST: gi|213602730|gb|DB968928.1|DB968928
EST:     AGCACAGAAGCAAAGGCGTCGTACCTACAGAGCTCATGGAAGAATCAACC                         CTTACATGTCATCTCCATGCCACATTGAGCTGATATTGTCTGAGAAGGAAG
genomic: AGCACAGAAGCAAAGGCGTCGTACCTACAGAGCTCATGGAAGAATCAACCgtatgtcact ... ttttttgcagCTTACATGTCATCTCCATGCCACATTGAGCTGATATTGTCTGAGAAGGAAG
EST: gi|192294589|gb|FG986438.1|FG986438
EST:     AGCACAGAAGCAAAGGCGTCGTACCTACAGAGCTCATGGAAGAATCAACC                         CTTACATGTCATCTCCATGCCACATTGAGCTGATATTGTCTGAGAAGGAAG
genomic: AGCACAGAAGCAAAGGCGTCGTACCTACAGAGCTCATGGAAGAATCAACCgtatgtcact ... ttttttgcagCTTACATGTCATCTCCATGCCACATTGAGCTGATATTGTCTGAGAAGGAAG
EST: gi|192315909|gb|FK007070.1|FK007070
EST:     AGCACAGAAGCAAAGGCGTCGTACCTACAGAGCTCATGGAAGAATCAACC                         CTTACATGTCATCTCCATGCCACATTGAGCTGATATTGTCTGAGAAGGAAG
genomic: AGCACAGAAGCAAAGGCGTCGTACCTACAGAGCTCATGGAAGAATCAACCgtatgtcact ... ttttttgcagCTTACATGTCATCTCCATGCCACATTGAGCTGATATTGTCTGAGAAGGAAG
EST: gi|209728279|gb|BW658491.1|BW658491
EST:     AGCACAGAAGCAAAGGCGTCGTACCTACAGAGCTCATGGAAGAATCAACC                         CTTACATGTCATCTCCATGCCACCATTGAGCTGATATTGTCTGAGAAGGAA
genomic: AGCACAGAAGCAAAGGCGTCGTACCTACAGAGCTCATGGAAGAATCAACCgtatgtcact ... ttttttgcagCTTACATGTCATCTCCATGCCAC-ATTGAGCTGATATTGTCTGAGAAGGAA
EST: gi|10843191|gb|BF066504.1|BF066504
EST:     AGCACAGAAGCAAAGGCGTCGTACCTACAGAGCTCATGGAAGAATCAACC                         CTTACATGTCATCTGCATGCCACATTGAGCTGATATTGTCTGAGAAGGAAG
genomic: AGCACAGAAGCAAAGGCGTCGTACCTACAGAGCTCATGGAAGAATCAACCgtatgtcact ... ttttttgcagCTTACATGTCATCTCCATGCCACATTGAGCTGATATTGTCTGAGAAGGAAG
EST: gi|192330296|gb|FK019861.1|FK019861
EST:     AGTACAGAAGCAAAGGCGTCGTACCTACAGAGCTCATGGAAGAATCAACC                         CTTACATGTCATCTCCATGCCACATTGAGCTGATATTGTCTGAGAAGGAAG
genomic: AGCACAGAAGCAAAGGCGTCGTACCTACAGAGCTCATGGAAGAATCAACCgtatgtcact ... ttttttgcagCTTACATGTCATCTCCATGCCACATTGAGCTGATATTGTCTGAGAAGGAAG
EST: gi|209709087|gb|BW658803.1|BW658803
EST:     AGCACAGAAGCAAAGGCGTCGTACCTACAGAGCTCATGGAAGAATCAACC                         CTTACATGTCATCTCCATGCCACATTGAGCTGATATTGTCTGAGAAGGAAG
genomic: AGCACAGAAGCAAAGGCGTCGTACCTACAGAGCTCATGGAAGAATCAACCgtatgtcact ... ttttttgcagCTTACATGTCATCTCCATGCCACATTGAGCTGATATTGTCTGAGAAGGAAG
EST: gi|18718319|gb|BM523049.1|BM523049
EST:     AGCACAGAAGCAAAGGCGTCGTACCTACAGAGCTCATGGAAGAATCAACC                         CTTACATGTCATCTCCATGCCACATTGAGCTGATATTGTCTGAGAAGGAAG
genomic: AGCACAGAAGCAAAGGCGTCGTACCTACAGAGCTCATGGAAGAATCAACCgtatgtcact ... ttttttgcagCTTACATGTCATCTCCATGCCACATTGAGCTGATATTGTCTGAGAAGGAAG
EST: gi|213605006|gb|DB982312.1|DB982312
EST:     AGCACAGAAGCAAAGGCGTCGTACCTACAGAGCTCATGGAAGAATCAACC                         CTTACATGTCATCTCCATGCCACATTGAGCTGATATTGTCTGAGAAGGAAG
genomic: AGCACAGAAGCAAAGGCGTCGTACCTACAGAGCTCATGGAAGAATCAACCgtatgtcact ... ttttttgcagCTTACATGTCATCTCCATGCCACATTGAGCTGATATTGTCTGAGAAGGAAG
EST: gi|209696456|gb|BW655663.1|BW655663
EST:     AGCACAGAAGCAAAGGCGTCGTACCTACAGAGCTCATGGAAGAATCAACC                         CTTACATGTCATCTCCATGCCACATTGAGCTGATATTGTCTGAGAAGGAAG
genomic: AGCACAGAAGCAAAGGCGTCGTACCTACAGAGCTCATGGAAGAATCAACCgtatgtcact ... ttttttgcagCTTACATGTCATCTCCATGCCACATTGAGCTGATATTGTCTGAGAAGGAAG
EST: gi|298163726|gb|HO012459.1|HO012459
EST:     AGCACAGAAGCAAAGGCGTCGTACCTACAGAGCTCATGGAAGAATCAACC                         CTTACATGTCATCTCCATGCCACATTGAGCTGATATTGTCTGAGAAGGAAG
genomic: AGCACAGAAGCAAAGGCGTCGTACCTACAGAGCTCATGGAAGAATCAACCgtatgtcact ... ttttttgcagCTTACATGTCATCTCCATGCCACATTGAGCTGATATTGTCTGAGAAGGAAG
EST: gi|192300828|gb|FG989725.1|FG989725
EST:     AGCACAGAAGCAAAGGCGTCGTACCTACAGAGCTCATGGAAGAATCAACC                         CTTACATGTCATCTCCATGCCACATTGAGCTGATATTGTCTGAGAAGGAAG
genomic: AGCACAGAAGCAAAGGCGTCGTACCTACAGAGCTCATGGAAGAATCAACCgtatgtcact ... ttttttgcagCTTACATGTCATCTCCATGCCACATTGAGCTGATATTGTCTGAGAAGGAAG
EST: gi|298191987|gb|HO036069.1|HO036069
EST:     AGCACAGAAGCAAAGGCGTCGTACCTACAGAGCTCATGGAAGAATCAACC                         CTTACATGTCATCTCCATGCCACATTGAGCTGATATTGTCTGAGAAGGAAG
genomic: AGCACAGAAGCAAAGGCGTCGTACCTACAGAGCTCATGGAAGAATCAACCgtatgtcact ... ttttttgcagCTTACATGTCATCTCCATGCCACATTGAGCTGATATTGTCTGAGAAGGAAG
EST: gi|192304747|gb|FG998777.1|FG998777
EST:     AGCACAGAAGCAAAGGCGTCGTACCTACAGAGCTCATGGAAGAATCAACC                         CTTACATGTCATCTCCATGCCACATTGAGCTGATATTGTCTGAGAAGGAAG
genomic: AGCACAGAAGCAAAGGCGTCGTACCTACAGAGCTCATGGAAGAATCAACCgtatgtcact ... ttttttgcagCTTACATGTCATCTCCATGCCACATTGAGCTGATATTGTCTGAGAAGGAAG
EST: gi|209697266|gb|BW675477.1|BW675477
EST:     AGCACAGAAGCAAAGGCGTCGTACCTACAGAGCTCATGGAAGAATCAACC                         CTTACATGTCATCTCCATGCCACATTGAGCTGATATTGTCTGAGAAGGAAG
genomic: AGCACAGAAGCAAAGGCGTCGTACCTACAGAGCTCATGGAAGAATCAACCgtatgtcact ... ttttttgcagCTTACATGTCATCTCCATGCCACATTGAGCTGATATTGTCTGAGAAGGAAG
EST: gi|26059831|gb|CA802745.1|CA802745
EST:     AGCACAGAAGCAAAGGCGTCGTACCTACAGAGCTCATGGAAGAATCAACC                         CTTACATGTCATCTCCATGCCACATTGAGCTGATATTGTCTGAGAAGGAAG
genomic: AGCACAGAAGCAAAGGCGTCGTACCTACAGAGCTCATGGAAGAATCAACCgtatgtcact ... ttttttgcagCTTACATGTCATCTCCATGCCACATTGAGCTGATATTGTCTGAGAAGGAAG
EST: gi|213592920|gb|DB966025.1|DB966025
EST:     AGCACAGAAGCAAAGGCGTCGTACCTACAGAGCTCATGGAAGAATCAACC                         CTTACATGTCATCTCCATGCCACATTGAGCTGATATTGTCTGAGAAGGAAG
genomic: AGCACAGAAGCAAAGGCGTCGTACCTACAGAGCTCATGGAAGAATCAACCgtatgtcact ... ttttttgcagCTTACATGTCATCTCCATGCCACATTGAGCTGATATTGTCTGAGAAGGAAG
EST: gi|213613516|gb|DB978621.1|DB978621
EST:     AGCACAGAAGCAAAGGCGTCGTACCTACAGAGCTCATGGAAGAATCAACC                         CTTACATGTCATCTCCATGCCACATTGAGCTGATATTGTCTGAGAAGGAAG
genomic: AGCACAGAAGCAAAGGCGTCGTACCTACAGAGCTCATGGAAGAATCAACCgtatgtcact ... ttttttgcagCTTACATGTCATCTCCATGCCACATTGAGCTGATATTGTCTGAGAAGGAAG
EST: gi|58016113|gb|CX702855.1|CX702855
EST:     AGCACAGAAGCAAAGGCGTCGTACCTACAGAGCTCATGGAAGAATCAACC                         CTTACATGTCATCTCCATGCCACATTGAGCTGATATTGTCTGAGAAGGAAG
genomic: AGCACAGAAGCAAAGGCGTCGTACCTACAGAGCTCATGGAAGAATCAACCgtatgtcact ... ttttttgcagCTTACATGTCATCTCCATGCCACATTGAGCTGATATTGTCTGAGAAGGAAG
EST: gi|213598906|gb|DB971934.1|DB971934
EST:     AGCACAGAAGCAAAGGCGTCGTACCTACAGAGCTCATGGAAGAATCAACC                         CTTACATGTCATCTCCATGCCACATTGAGCTG
genomic: AGCACAGAAGCAAAGGCGTCGTACCTACAGAGCTCATGGAAGAATCAACCgtatgtcact ... ttttttgcagCTTACATGTCATCTCCATGCCACATTGAGCTG
EST: gi|192304746|gb|FG998776.1|FG998776
EST:     AGCACAGAAGCAAAGGCGTCGTACCTACAGAGCTCATGGAAGAATCAACC                         CTTACATGTCATCTCCATGCCACATTGAGCTGATATTGTCTGAGAAGGAAG
genomic: AGCACAGAAGCAAAGGCGTCGTACCTACAGAGCTCATGGAAGAATCAACCgtatgtcact ... ttttttgcagCTTACATGTCATCTCCATGCCACATTGAGCTGATATTGTCTGAGAAGGAAG
EST: gi|14991547|gb|BI317220.1|BI317220
EST:     AGCACAGAAGCAAAGGCGGCGTACCTACAGAGCTCATGGAAGAATCAACC                         CTTACATGTCATCTCCATGCCAC
genomic: AGCACAGAAGCAAAGGCGTCGTACCTACAGAGCTCATGGAAGAATCAACCgtatgtcact ... ttttttgcagCTTACATGTCATCTCCATGCCAC
EST: gi|24205425|gb|BU964678.1|BU964678
EST:     AGCACAGAAGCAAAGGCGTCGTACCTACAGAGCTCATGGAAGAATCAACC                         CTTACATGTCATCTCCATGCCACATTGAGCTGATATTGTCTGAGAAGGAAG
genomic: AGCACAGAAGCAAAGGCGTCGTACCTACAGAGCTCATGGAAGAATCAACCgtatgtcact ... ttttttgcagCTTACATGTCATCTCCATGCCACATTGAGCTGATATTGTCTGAGAAGGAAG
EST: gi|209701081|gb|BW652167.1|BW652167
EST:     AGCACAGAAGCAAAGGCGTCGTACCTACAGAGCTCATGGAAGAATCAACC                         CTTACATGTCATCTCCATGCCACATTGAGCTGATATTGTCTGAGAAGGAAG
genomic: AGCACAGAAGCAAAGGCGTCGTACCTACAGAGCTCATGGAAGAATCAACCgtatgtcact ... ttttttgcagCTTACATGTCATCTCCATGCCACATTGAGCTGATATTGTCTGAGAAGGAAG
EST: gi|209697265|gb|BW675476.1|BW675476
EST:     AGCACAGAAGCAAAGGCGTCGTACCTACAGAGCTCATGGAAGAATCAACC                         CTTACATGTCATCTCCATGCCACATTGAGCTGATATTGTCTGAGAAGGAAG
genomic: AGCACAGAAGCAAAGGCGTCGTACCTACAGAGCTCATGGAAGAATCAACCgtatgtcact ... ttttttgcagCTTACATGTCATCTCCATGCCACATTGAGCTGATATTGTCTGAGAAGGAAG
EST: gi|192315910|gb|FK007071.1|FK007071
EST:     AGCACAGAAGCAAAGGCGTCGTACCTACAGAGCTCATGGAAGAATCAACC                         CTTACATGTCATCTCCATGCCACATTGAGCTGATATTGTCTGAGAAGGAAG
genomic: AGCACAGAAGCAAAGGCGTCGTACCTACAGAGCTCATGGAAGAATCAACCgtatgtcact ... ttttttgcagCTTACATGTCATCTCCATGCCACATTGAGCTGATATTGTCTGAGAAGGAAG
EST: gi|213593378|gb|DB973571.1|DB973571
EST:     AGCACAGAAGCAAAGGCGTCGTACCTACAGAGCTCATGGAAGAATCAACC                         CTTACATGTCATCTCCATGCCACATTGAGCTGATATTGTCTGAGAAGGAAG
genomic: AGCACAGAAGCAAAGGCGTCGTACCTACAGAGCTCATGGAAGAATCAACCgtatgtcact ... ttttttgcagCTTACATGTCATCTCCATGCCACATTGAGCTGATATTGTCTGAGAAGGAAG
EST: gi|213591076|gb|DB979323.1|DB979323
EST:     AGCACAGAAGCAAAGGCGTCGTACCTACAGAGCTCATGGAAGAATCAACC                         CTTACATGTCATCTCCATGCCACATTGAGCTGATATTGTCTGAGAAGGAAG
genomic: AGCACAGAAGCAAAGGCGTCGTACCTACAGAGCTCATGGAAGAATCAACCgtatgtcact ... ttttttgcagCTTACATGTCATCTCCATGCCACATTGAGCTGATATTGTCTGAGAAGGAAG
EST: gi|151403328|gb|EV273138.1|EV273138
EST:     AGCACAGAAGCAAAGGCGTCGTACCTACAGAGCTCATGGAAGAATCAACC                         CTTACATGTCATCTCCATGCCACATTGAGCTGATATTGTCTGAGAAGGAAG
genomic: AGCACAGAAGCAAAGGCGTCGTACCTACAGAGCTCATGGAAGAATCAACCgtatgtcact ... ttttttgcagCTTACATGTCATCTCCATGCCACATTGAGCTGATATTGTCTGAGAAGGAAG
EST: gi|151407792|gb|EV277607.1|EV277607
EST:     AGCACAGAAGCAAAGGCGTCGTACCTACAGAGCTCATGGAAGAATCAACC                         CTTACATGTCATCTCCATGCCACATTGAGCTGATATTGTCTGAGAAGGAAG
genomic: AGCACAGAAGCAAAGGCGTCGTACCTACAGAGCTCATGGAAGAATCAACCgtatgtcact ... ttttttgcagCTTACATGTCATCTCCATGCCACATTGAGCTGATATTGTCTGAGAAGGAAG
EST: gi|151400371|gb|EV270185.1|EV270185
EST:     AGCACAGAAGCAAAGGCGTCGTACCTACAGAGCTCATGGAAGAATCAACC                         CTTACATGTCATCTCCATGCCACATTGAGCTGATATTGTCTGAGAAGGAAG
genomic: AGCACAGAAGCAAAGGCGTCGTACCTACAGAGCTCATGGAAGAATCAACCgtatgtcact ... ttttttgcagCTTACATGTCATCTCCATGCCACATTGAGCTGATATTGTCTGAGAAGGAAG
EST: gi|214007626|gb|DB987399.1|DB987399
EST:     AGCACAGAAGCAAAGGCGTCGTACCTACAGAGCTCATGGAAGAATCAACC                         CTTACATGTCATCTCCATGCCACATTGAGCTGATATTGTCTGAGAAGGAAG
genomic: AGCACAGAAGCAAAGGCGTCGTACCTACAGAGCTCATGGAAGAATCAACCgtatgtcact ... ttttttgcagCTTACATGTCATCTCCATGCCACATTGAGCTGATATTGTCTGAGAAGGAAG
EST: gi|7685510|gb|AW756158.1|AW756158
EST:     ATCACAGAAGCAAAGGCGTCGTACCTACAGAGCTCATGGAAGAATCAACC                         CTTACATGTCATCTGCATGCCACATTGAGCTGATATTGTCTGAGAAGGAAG
genomic: AGCACAGAAGCAAAGGCGTCGTACCTACAGAGCTCATGGAAGAATCAACCgtatgtcact ... ttttttgcagCTTACATGTCATCTCCATGCCACATTGAGCTGATATTGTCTGAGAAGGAAG
EST: gi|213611894|gb|DB964814.1|DB964814
EST:     AGCACAGAAGCAAAGGCGTCGTACCTACAGAGCTCATGGAAGA-TCAACC                         CTTACATGTCATCTCCATGCCACATTGAGCTG
genomic: AGCACAGAAGCAAAGGCGTCGTACCTACAGAGCTCATGGAAGAATCAACCgtatgtcact ... ttttttgcagCTTACATGTCATCTCCATGCCACATTGAGCTG
EST: gi|58014186|gb|CX700928.1|CX700928
EST:     AGCACAGAAGCAAAGGCGTCGTACCTACAGAGCTCATGGAAGAATCAACC                         CTTACATGTCATCTCCATGCCACATTGAGCTGATATTGTCTGAGAAGGAAG
genomic: AGCACAGAAGCAAAGGCGTCGTACCTACAGAGCTCATGGAAGAATCAACCgtatgtcact ... ttttttgcagCTTACATGTCATCTCCATGCCACATTGAGCTGATATTGTCTGAGAAGGAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAAGGTTTGGATGTCGATGCTCTGTACATTTCCCATGTCCAGGTTAATCAAGCACAGAAGCAAAGGCGTCGTACCTACAGAGCTCATGGAAGAATCAACCgtatgtcactgattttgttgatattgtcgacttaatggactactattacatgcttttgttgagagagtcctttttttttgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAAGA