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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGGATATATGGAATGCCCCAACTGTTGGATCGGTATGGCCTGGGCATCCCTATCGGACCTGGGACAATGgtacgagacttaaatctaaaagattaaaatcaattatttgtaacttctaatttcaggacgaacatttttttaattactcattgagtatttcatgacaaca...

Basic information

species Glycine max
transcript GLYMA11G36990.2
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254316561|gb|GR828098.1|GR828098
EST:     AACTGTTGGATCGGTATGGCCTGGGCATCCCTATCGGACCTGGGACAATG                         GGTGCTAGGCCTGGATTTTTTCACGATGACA-GTCACAGAAAAAAG
genomic: AACTGTTGGATCGGTATGGCCTGGGCATCCCTATCGGACCTGGGACAATGgtacgagact ... gcttgggcagGGTGCTAGGCCTGGATTTTTTCACGATGACAAGTCACAGAAAAAAG
EST: gi|193303415|gb|FK271601.1|FK271601
EST:     TTGGATCGGTATGGCCTGGGCATCCCTATCGGACCTGGGACAATG                         GGTGCTAGGCCTGGATTTTTTCACGATGACAAGTCACAGAAAAAAG
genomic: TTGGATCGGTATGGCCTGGGCATCCCTATCGGACCTGGGACAATGgtacgagact ... gcttgggcagGGTGCTAGGCCTGGATTTTTTCACGATGACAAGTCACAGAAAAAAG
EST: gi|9899202|gb|BE608100.1|BE608100
EST:     AACTGTTGGATCGGTATGGGCTGGGCATCCCTATCGGACCTGNGACAATG                         GGTGCTAGGCCTGGATTTTT-CACGATGACA-GTCACAGAAAAA-G
genomic: AACTGTTGGATCGGTATGGCCTGGGCATCCCTATCGGACCTGGGACAATGgtacgagact ... gcttgggcagGGTGCTAGGCCTGGATTTTTTCACGATGACAAGTCACAGAAAAAAG
EST: gi|13563438|gb|BG551584.1|BG551584
EST:     AACTGTTGGATCGGTATGGCCTGGGCATCCCTATCGGACCTGGGACAATG                         GGTGCTAGGCCTGGATTTTTTCACGATGACAAGTCACAGAAAAAAG
genomic: AACTGTTGGATCGGTATGGCCTGGGCATCCCTATCGGACCTGGGACAATGgtacgagact ... gcttgggcagGGTGCTAGGCCTGGATTTTTTCACGATGACAAGTCACAGAAAAAAG
EST: gi|254316562|gb|GR828099.1|GR828099
EST:     AACTGTTGGATCGGTATGGCCTGGGCATCCCTATCGGACCTGGGACAATG                         GGTGCTAGGCCTGGATTTTTTCACGATGACAAGTCACAGAAAAAAG
genomic: AACTGTTGGATCGGTATGGCCTGGGCATCCCTATCGGACCTGGGACAATGgtacgagact ... gcttgggcagGGTGCTAGGCCTGGATTTTTTCACGATGACAAGTCACAGAAAAAAG
EST: gi|192328242|gb|FK020461.1|FK020461
EST:     AACTGTTGGATCGGTATGGCCTGGGCATCCCTATCGGACCTGGGACAATG                         GGTGCTAGGCCTGGATTTTTTCACGATGACAAGTCACAGAAAAAAG
genomic: AACTGTTGGATCGGTATGGCCTGGGCATCCCTATCGGACCTGGGACAATGgtacgagact ... gcttgggcagGGTGCTAGGCCTGGATTTTTTCACGATGACAAGTCACAGAAAAAAG
EST: gi|14011543|gb|BG726465.1|BG726465
EST:     AACTGTTGGATCGGTATGGCCTGGGCATCCCTATCGGACCTGGGTCTTTG                         GGTGCTAGGCCTGGATTTTTTCACGATGACAAGTCACTAGAAAAAAG
genomic: AACTGTTGGATCGGTATGGCCTGGGCATCCCTATCGGACCTGGGACAATGgtacgagact ... gcttgggcagGGTGCTAGGCCTGGATTTTTTCACGATGACAAGTCAC-AGAAAAAAG
EST: gi|23729396|gb|BU762782.1|BU762782
EST:     GTTGGATCGGTATGGCCTGGGCATCCCTATCGGACCTGGGACAATG                         GGTGCTAGGCCTGGATTTTTTCACGATGACAAGTCACAGAAAAAAG
genomic: GTTGGATCGGTATGGCCTGGGCATCCCTATCGGACCTGGGACAATGgtacgagact ... gcttgggcagGGTGCTAGGCCTGGATTTTTTCACGATGACAAGTCACAGAAAAAAG
EST: gi|254331208|gb|GR845787.1|GR845787
EST:     AACTGTTGGATCGGTATGGCCTGGGCATCCCTATCGGACCTGGGACAATG                         GGTGCTAGGCCTGGATTTTTTCACGATGACAAGTCACAGAAAAAAG
genomic: AACTGTTGGATCGGTATGGCCTGGGCATCCCTATCGGACCTGGGACAATGgtacgagact ... gcttgggcagGGTGCTAGGCCTGGATTTTTTCACGATGACAAGTCACAGAAAAAAG
EST: gi|192328139|gb|FK022848.1|FK022848
EST:     AACTGTTGGATCGGTATGGCCTGGGCATCCCTATCGGACCTGGGACAATG                         GGTGCTAGGCCTGGATTTTTTCACGATGACAAGTCACAGAAAA
genomic: AACTGTTGGATCGGTATGGCCTGGGCATCCCTATCGGACCTGGGACAATGgtacgagact ... gcttgggcagGGTGCTAGGCCTGGATTTTTTCACGATGACAAGTCACAGAAAA