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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACACAGAGATCATAGAGCAGATTGACCGAGATGTCAAGCGTACTCATCCAGATATAGACTTCTTCTCTGGTGATTCTCATTTTGCAAAATCTAATCAGgttcttcctctattttttaattttattttcaaattcataccaactcaatcctttttcttgccattttgactttcaacttttccggatttttcag

Basic information

species Glycine max
transcript GLYMA11G36520.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G36520.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os04g30880.1 (Oryza sativa), 5'ss of exon 5
GACACAGAGATCATAGAGCAGATTGACCGAGATGTCAAGCGTACTCATCCAGATATAGACTTCTTCTCTGGTGATTCTCATTTTGCAAAATCTAATCAGgttcttcctctattttttaattttattttcaaattcataccaactcaatcctttttcttgccattttgactttcaacttttccggatttttcag
||  | || |  ||||||||||||||  ||||||| |||||||||||||| || ||  | || |||  ||| ||||||  |  |||    |||||||| ||    | | |||| | | || | ||     | ||| |     ||   |    | ||  |  |   | | | | |  | |    |  | |||||
GAATCTGAAACTATAGAGCAGATTGATAGAGATGTTAAGCGTACTCATCCTGAGATGCAATTTTTCAATGGGGATTCTTCTGATGCCTTGTCTAATCAAgtaag-catttattatctgatatgatgcc--agttctttttgtcttt-tgtaatgtccagttaggctaaatgtgatatatgtttg--tcttcag

upper sequence: GLYMA11G36520.1 (Glycine max), 5'ss of exon 5
lower sequence: AT4G13730.2 (Arabidopsis thaliana), 5'ss of exon 5
GACACAGAGATCATAGAGCAGATTGACCGAGATGTCAAGCGTACTCATCCAGATATAGACTTCTTCTCTGGTGATTCTCATTTTGCAAAATCTAATCAGgttc--------ttcctctattttttaattttattttcaaattcataccaactcaatcctttttcttgccattttgactttcaacttttccggatttttcag
||||||||  |  | || || || || || ||||| | ||||||||||||||||||  |||| |||||||| |||||     ||||||||||||||||||||         ||   ||||  |||||     ||   |   | | | || |   || ||  |  ||    || |   |||  || | |   |  | |  ||
GACACAGAAGTTTTGGAACAAATAGAACGCGATGTGATGCGTACTCATCCAGATATGCACTTTTTCTCTGGGGATTCAGCAGTTGCAAAATCTAATCAGgttgggtgttggttttgctatagtttaaagcctttgggatgattaaaacatcagtatactgatagtttttcttgtctttttatacatgttttgcatgtctag

upper sequence: GLYMA11G36520.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv05s0029g01350.t01 (Vitis vinifera), 5'ss of exon 5
GACACAGAGATCATAGAGCAGATTGACCGAGATGTCAAGCGTACTCATCCAGATATAGACTTCTTCTCTGGTGATTCTCATTTTGCAAAATCTAATCAGgttcttcctctattttttaattttattttcaaattcataccaactcaatcctttttcttgccattttgactttcaacttttccggatttttcag
|||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||  ||||||||||||| ||  | |  | ||||||| | ||||||||   |  | |   ||      | |      | || |||| |||   | || |||        |       | |    |||| |          
GACACAGAGATCATAGAGCAAATTGACCGAGATGTCAAGCGCACTCATCCAGACATGAACTTCTTCTCTGGGGACACGCCATCTGCAAAAACAAATCAGgtatgtgttgttacttgaggcatga-----gacttgatacaaacatcacccatttgaccaaattaaatggatcctgtatttcag----------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208127508|gb|GD921698.1|GD921698
EST:     CAGATATAGACTTCTTCTCTGGTGATTCTCATTTTGCAAAATCTAATCAG                         GAGGCTTTAAAGACCATATTAATTATTTTTGCAAAGTTGAACTCAGGTATA
genomic: CAGATATAGACTTCTTCTCTGGTGATTCTCATTTTGCAAAATCTAATCAGgttcttcctc ... gatttttcagGAGGCTTTAAAGACCATATTAATTATTTTTGCAAAGTTGAACTCAGGTATA