1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AGCTGTGGGCAATGTTAGTATGGAGGAAAAGCAAATCTTCCAAAATGTTCAACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAACTGGCAAAATgtgagtagtagtccacactcaatatttcttaaactcattgcctctggtgccttcttttttattgtgcttttcttgaaattatatgttcttgttgctgttt...
species | Glycine max |
transcript | GLYMA11G35450.4 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAACTGGCAAAAT GTTAGGTGCTTGTATCTGAAGAGTACAATGGGGAAATGTTACCGTGTCTTTEST: gi|58017635|gb|CX704377.1|CX704377
genomic: AACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAACTGGCAAAATgtgagtagta ... ttgatttcagGTTAGGTGCTTGTATCTGAAGAGTACAATGGGGAAATGTTACCGTGTCTTT
EST: AACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAACTGGCAAAAT GTTAGGTGCTTGTATCTGAAGAGTACAATGGGGAAATGTTACCGTGTCTTTEST: gi|192305924|gb|FG995796.1|FG995796
genomic: AACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAACTGGCAAAATgtgagtagta ... ttgatttcagGTTAGGTGCTTGTATCTGAAGAGTACAATGGGGAAATGTTACCGTGTCTTT
EST: AACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAACTGGCAAAAT GTTAGGTGCTTGTATCTGAAGAGTACAATGGGGAAATGTTACCGTGTCTTTEST: gi|18848831|gb|BM567943.1|BM567943
genomic: AACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAACTGGCAAAATgtgagtagta ... ttgatttcagGTTAGGTGCTTGTATCTGAAGAGTACAATGGGGAAATGTTACCGTGTCTTT
EST: AACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAACTGGCAAAAT GTTAGGTGCTTGTATCTGAAGAGEST: gi|214004726|gb|DB985379.1|DB985379
genomic: AACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAACTGGCAAAATgtgagtagta ... ttgatttcagGTTAGGTGCTTGTATCTGAAGAG
EST: AACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAACTGGCAAAAT GTTAGGTGCTTGTATCTGAAGAGTACAATGGGGAAATGTTACCGTGTCTTTEST: gi|151400505|gb|EV270319.1|EV270319
genomic: AACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAACTGGCAAAATgtgagtagta ... ttgatttcagGTTAGGTGCTTGTATCTGAAGAGTACAATGGGGAAATGTTACCGTGTCTTT
EST: AACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAA-GAACTGGCAAAAT GTTAG-TGCTTGTATCTGAAGAGTACAATGGGGAAATGTTACCGTGTCTTTEST: gi|151400830|gb|EV270644.1|EV270644
genomic: AACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAACTGGCAAAATgtgagtagta ... ttgatttcagGTTAGGTGCTTGTATCTGAAGAGTACAATGGGGAAATGTTACCGTGTCTTT
EST: AACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAACTGGCAAAAT GTTAGGTGCTTGTATCTGAAGAGTACAATGGGGGAAATGTTACCGTGTCTTEST: gi|58014260|gb|CX701002.1|CX701002
genomic: AACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAACTGGCAAAATgtgagtagta ... ttgatttcagGTTAGGTGCTTGTATCTGAAGAGTACAATGGGG-AAATGTTACCGTGTCTT
EST: AACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAACTGGCAAAAT GTTAGGTGCTTGTATCTGAAGAGTACAATGGGGAAATGTTACCGTGTCTTTEST: gi|308099186|gb|HO761027.1|HO761027
genomic: AACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAACTGGCAAAATgtgagtagta ... ttgatttcagGTTAGGTGCTTGTATCTGAAGAGTACAATGGGGAAATGTTACCGTGTCTTT
EST: AACTGAGTGCTAACTTCCTTGTCTCTTTGTTGAAAAAGAACTGGCAAAAT GTTAGGTGCTTGTATCTGAAGAGTEST: gi|151393924|gb|EV263795.1|EV263795
genomic: AACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAACTGGCAAAATgtgagtagta ... ttgatttcagGTTAGGTGCTTGTATCTGAAGAGT
EST: AACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAACTGGCAAAAT GTTAGGTGCTTGTATCTGAAGAGTACAATGGGGAAATGTTACCGTGTCTTTEST: gi|254316553|gb|GR828090.1|GR828090
genomic: AACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAACTGGCAAAATgtgagtagta ... ttgatttcagGTTAGGTGCTTGTATCTGAAGAGTACAATGGGGAAATGTTACCGTGTCTTT
EST: AACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAACTGGCAAAAT GTTAGGTGCTTGTATCTGAAGAGTACAATGGGGAAATGTTACCGTGTCTTTEST: gi|15286513|gb|BI470404.1|BI470404
genomic: AACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAACTGGCAAAATgtgagtagta ... ttgatttcagGTTAGGTGCTTGTATCTGAAGAGTACAATGGGGAAATGTTACCGTGTCTTT
EST: AACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAACTGGCAAAAT GTTAGGTGCTTGTATCTGAAGAGTACAATGGGGAAATGTTACCGTGTCTTTEST: gi|24136835|gb|BU927345.1|BU927345
genomic: AACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAACTGGCAAAATgtgagtagta ... ttgatttcagGTTAGGTGCTTGTATCTGAAGAGTACAATGGGGAAATGTTACCGTGTCTTT
EST: AACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAACTGGCAAAAT GTTAGGTGCTTGTATCTGAEST: gi|254316554|gb|GR828091.1|GR828091
genomic: AACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAACTGGCAAAATgtgagtagta ... ttgatttcagGTTAGGTGCTTGTATCTGA
EST: AACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAACTGGCAAAAT GTTAGGTGCTTGTATCTGAAGAGTACAATGGGGAAATGTTACCGTGTCTTTEST: gi|13481097|gb|BG510440.1|BG510440
genomic: AACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAACTGGCAAAATgtgagtagta ... ttgatttcagGTTAGGTGCTTGTATCTGAAGAGTACAATGGGGAAATGTTACCGTGTCTTT
EST: AACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAACTGGCAAAAT GTTAGGTGCTTGTATCTGAAGAGTACAATGGGGAAATGTTACCGTGTCTTTEST: gi|209701463|gb|BW667324.1|BW667324
genomic: AACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAACTGGCAAAATgtgagtagta ... ttgatttcagGTTAGGTGCTTGTATCTGAAGAGTACAATGGGGAAATGTTACCGTGTCTTT
EST: AACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAACTGGCAAAAT GTTAGGTGCTTGTATCTGAAGAGTACAATGGGGAAATGTTACCGTGTCTTT
genomic: AACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAACTGGCAAAATgtgagtagta ... ttgatttcagGTTAGGTGCTTGTATCTGAAGAGTACAATGGGGAAATGTTACCGTGTCTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCTGTGGGCAATGTTAGTATGGAGGAAAAGCAAATCTTCCAAAATGTTCAACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAACTGGCAAAATgtgagtagtagtccacactcaatatttcttaaactcattgcctctggtgccttcttttttattgtgcttttcttgaaattatatgttcttgttgctgttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC