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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAAACAGAAGGGAGACACGGCTGTTGGGTATTCTTTCTTTTGTACACAGTACAGTATGGAAAGTATTATTTGGAAAGgtgagcttctttatcaaaatttgcttgtttgttaaacaatgacatgaaatatcctttgcttagagacatgagatttcttagtcttgagcctttgtcatcc...

Basic information

species Glycine max
transcript GLYMA11G34840.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G34840.1 (Glycine max), 5'ss of exon 5
lower sequence: AT5G58030.1 (Arabidopsis thaliana), 5'ss of exon 4
GGAAACAGAAGGGAGACACGGCTGTTGGGTATTCTTTCTTTTGTACACAGTACAGTATGGAAAGTATTATTTGGAAAGgtgagcttctttatcaaaatttgcttgtttgttaaacaatgacatgaaatatcctttgcttagagacatgagatttcttagtcttga-gcctttgtcatcc
||||||||||| ||||||||| |  |||| ||||| ||||| || |||||||| || |||||||| || ||||||||||||||   |  | ||||| ||   ||  ||||| |    |   ||  |    ||| | | | ||  |      |  || |  ||| | |    || |||  
GGAAACAGAAGAGAGACACGGTTACTGGGAATTCTGTCTTTCGTTCACAGTACTGTGTGGAAAGTGTTGTTTGGAAAGgtgagtggcgatttcaaa-ttcaattagttgttgagtgtttctatcgacatgcctgttcctggattc------taactcacacttaacgaacatgccatag

upper sequence: GLYMA11G34840.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv11s0037g00110.t01 (Vitis vinifera), 5'ss of exon 4
GGAAACAGAAGGGAGACACGGCTGTTGGGTATTCTTTCTTTTGTACACAGTACAGTATGGAAAGTATTATTTGGAAAGgtgagcttc--tttatcaaaatttgcttgtttgttaaacaatgacatgaaatatcctttgcttagagacatgagatttcttagtcttgagcctttgtcatcc
|||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| || |||||||| ||||| |       |||       ||   || |||  |      |  || | |  |   || |  | | |   || |   | || || |  |   |  || |   
GGAAACAGAAGGGAGACACGACTATTGGGTATTCTTTCTTTTGTACACAGTACAGTATGGAAGGTGTTATTTGGGAAGgtaaagaagaattttctttttttcttttcttttctttttcttttcaaggagaacttttggagtggggttgtg-gtggtattggtatgtaaaataagtgaat-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254320117|gb|GR831033.1|GR831033
EST:     GTATTCTTTCTTTTGTACACAGTACAGTATGGAAAGTATTATTTGGAAAG                         GTTGCTGATTCACTGGAGAAAGGAACTGAACATGAAGATGAATACATGATC
genomic: GTATTCTTTCTTTTGTACACAGTACAGTATGGAAAGTATTATTTGGAAAGgtgagcttct ... ctaatattagGTTGCTGATTCACTGGAGAAAGGAACTGAACATGAAGATGAATACATGATC
EST: gi|151411948|gb|EV281759.1|EV281759
EST:     GTATTCTTTCTTTTGTACACAGTACAGTATGGAAAGTATTATTTGGAAAG                         GTTGCTGATTCACTGGAGAAAGGAACTGAACATGAAGATGAATACATGATC
genomic: GTATTCTTTCTTTTGTACACAGTACAGTATGGAAAGTATTATTTGGAAAGgtgagcttct ... ctaatattagGTTGCTGATTCACTGGAGAAAGGAACTGAACATGAAGATGAATACATGATC
EST: gi|207751764|gb|GD723645.1|GD723645
EST:     GTATTCTTTCTTTTGTACACAGTACAGTATGGAAAGTATTATTTGGAAAG                         GTAGCTGATTCACTGGAGAAAGGAACTGAACATGAAGATGAATACATGATC
genomic: GTATTCTTTCTTTTGTACACAGTACAGTATGGAAAGTATTATTTGGAAAGgtgagcttct ... ctaatattagGTTGCTGATTCACTGGAGAAAGGAACTGAACATGAAGATGAATACATGATC
EST: gi|208278600|gb|GE077931.1|GE077931
EST:     GTATTCTTTCTTTTGTACACAGTACAGTATGGAAAGTATTATTTGGAAAG                         GTTGCTGATTCACTGGAGAAAGGAACTGAACATGAAGATGAATACATGATC
genomic: GTATTCTTTCTTTTGTACACAGTACAGTATGGAAAGTATTATTTGGAAAGgtgagcttct ... ctaatattagGTTGCTGATTCACTGGAGAAAGGAACTGAACATGAAGATGAATACATGATC
EST: gi|151396616|gb|EV266493.1|EV266493
EST:     GTATTCTTTCTTTTGTACACAGTACAGTATGGAAAGTATTATTTGAAAAG                         GTTGCTGATTCACTGGAGAAAGGAACTGAACATGAAGATGAATACATGATC
genomic: GTATTCTTTCTTTTGTACACAGTACAGTATGGAAAGTATTATTTGGAAAGgtgagcttct ... ctaatattagGTTGCTGATTCACTGGAGAAAGGAACTGAACATGAAGATGAATACATGATC
EST: gi|151410774|gb|EV280589.1|EV280589
EST:     GTATTCTTTCTTTTGTACACAGTACAGTATGGAAAGTATTATTTGGAAAG                         GTTGCTGATTCTCTGGAGAAAGGAACTGAACATGAAGATGAATACATGATC
genomic: GTATTCTTTCTTTTGTACACAGTACAGTATGGAAAGTATTATTTGGAAAGgtgagcttct ... ctaatattagGTTGCTGATTCACTGGAGAAAGGAACTGAACATGAAGATGAATACATGATC
EST: gi|192320522|gb|FK011932.1|FK011932
EST:     GTATTCTTTCTTTTGTACACAGTACAGTATGGAAAGTATTATTTGGAAAG                         GTTGCTGATTCACTGGAGAAAGGAACTGAACATGAAGATGAATACATGATC
genomic: GTATTCTTTCTTTTGTACACAGTACAGTATGGAAAGTATTATTTGGAAAGgtgagcttct ... ctaatattagGTTGCTGATTCACTGGAGAAAGGAACTGAACATGAAGATGAATACATGATC
EST: gi|208134278|gb|GD931371.1|GD931371
EST:     GTATTCTTTCTTTTGTACACAGTACAGTATGGAAAGTATTATTTGGAAAG                         GTTGCTGATTCACTGGAGAAAGGAACTGAACATGAAGATGAATACATGATC
genomic: GTATTCTTTCTTTTGTACACAGTACAGTATGGAAAGTATTATTTGGAAAGgtgagcttct ... ctaatattagGTTGCTGATTCACTGGAGAAAGGAACTGAACATGAAGATGAATACATGATC
EST: gi|207701893|gb|GD683445.1|GD683445
EST:     GTATTCTTTCTTTTGTACACAGTACAGTATGGAAAGTATTATTTGGAAAG                         GTTGCTGATTCACTGGAGAAAGGAACTGAACATGAAGATGAATACATGATC
genomic: GTATTCTTTCTTTTGTACACAGTACAGTATGGAAAGTATTATTTGGAAAGgtgagcttct ... ctaatattagGTTGCTGATTCACTGGAGAAAGGAACTGAACATGAAGATGAATACATGATC
EST: gi|298191865|gb|HO035947.1|HO035947
EST:     GTATTCTTTCTTTTGTACACAGTACAGTATGGAAAGTATTATTTGGAAAG                         GTTGCTGATTCACTGGAGAAAGGAACTGAACATGAAGATGAATACATGATC
genomic: GTATTCTTTCTTTTGTACACAGTACAGTATGGAAAGTATTATTTGGAAAGgtgagcttct ... ctaatattagGTTGCTGATTCACTGGAGAAAGGAACTGAACATGAAGATGAATACATGATC
EST: gi|208256579|gb|GE057408.1|GE057408
EST:     GTATTCTTTCTTTTGTACACAGTACAGTATGGAAAGTATTATTTGGAAAG                         GTTGCTGATTCACTGGAGAAAGGAACTGAACATGAAGATGAATACATGATC
genomic: GTATTCTTTCTTTTGTACACAGTACAGTATGGAAAGTATTATTTGGAAAGgtgagcttct ... ctaatattagGTTGCTGATTCACTGGAGAAAGGAACTGAACATGAAGATGAATACATGATC
EST: gi|13477866|gb|BG507568.1|BG507568
EST:     GTATTCTTTCTTTTGTACACAGTACAGTATGGAAAGTATTATTTGGAAAG                         GTTGCTGATTCACTGGAGAAAGGAACTGAACATGAAGATGAATACATGATC
genomic: GTATTCTTTCTTTTGTACACAGTACAGTATGGAAAGTATTATTTGGAAAGgtgagcttct ... ctaatattagGTTGCTGATTCACTGGAGAAAGGAACTGAACATGAAGATGAATACATGATC
EST: gi|151405191|gb|EV275005.1|EV275005
EST:     GTATTCTTTCTTTTGTACACAGTACAGTATGGAAAGTATTATTTGGAAAG                         GTTGCTGATTCACTGGAGAAAGGAACTGAACATGAGGATGAATACATGATC
genomic: GTATTCTTTCTTTTGTACACAGTACAGTATGGAAAGTATTATTTGGAAAGgtgagcttct ... ctaatattagGTTGCTGATTCACTGGAGAAAGGAACTGAACATGAAGATGAATACATGATC
EST: gi|208221539|gb|GE018619.1|GE018619
EST:     GTATTCTTTCTTTTGTACACAGTACAGTATGGAAAGTATTATTTGGAAAG                         GTTGCTGATTCACTGGAGAAAGGAACTGAACATGAAGATGAATACATGATC
genomic: GTATTCTTTCTTTTGTACACAGTACAGTATGGAAAGTATTATTTGGAAAGgtgagcttct ... ctaatattagGTTGCTGATTCACTGGAGAAAGGAACTGAACATGAAGATGAATACATGATC
EST: gi|208098926|gb|GD891497.1|GD891497
EST:     TACAGTATGGAAAGTATTATTTGGAAAG                         GTTGCTGATTCACTGGAGAAAGGAACTGAACATGAAGATGAATACATGATC
genomic: TACAGTATGGAAAGTATTATTTGGAAAGgtgagcttct ... ctaatattagGTTGCTGATTCACTGGAGAAAGGAACTGAACATGAAGATGAATACATGATC
EST: gi|8286428|gb|BE023996.1|BE023996
EST:     GTATTCTTTCTTTTGTACACAGTACAGTATGGAAAGTATTATTTGGAAAG                         GTTGCTGATTCACTGGAGAAAGGAACTGAACATGAAGATGAATACATGATC
genomic: GTATTCTTTCTTTTGTACACAGTACAGTATGGAAAGTATTATTTGGAAAGgtgagcttct ... ctaatattagGTTGCTGATTCACTGGAGAAAGGAACTGAACATGAAGATGAATACATGATC
EST: gi|192320523|gb|FK011933.1|FK011933
EST:     GTATTCTTTCTTTTGTACACAGTACAGTATGGAAAGTATTATTTGGAAAG                         GTTGCTGATTCACTGGAGAAAGGAACTGAACATGAAGATGAATACATGATC
genomic: GTATTCTTTCTTTTGTACACAGTACAGTATGGAAAGTATTATTTGGAAAGgtgagcttct ... ctaatattagGTTGCTGATTCACTGGAGAAAGGAACTGAACATGAAGATGAATACATGATC
EST: gi|151412057|gb|EV281869.1|EV281869
EST:     GTATTCTTTCTTTTGTACACAGTACAGTATGGAAAGTATTATTTGGAAAG                         GTTGCTGATTCACTGGAGAAAGGAACTGAACATGAAGATGAATACATGATC
genomic: GTATTCTTTCTTTTGTACACAGTACAGTATGGAAAGTATTATTTGGAAAGgtgagcttct ... ctaatattagGTTGCTGATTCACTGGAGAAAGGAACTGAACATGAAGATGAATACATGATC
EST: gi|42723157|gb|CK769056.1|CK769056
EST:     GTATTCTTTCTTTTGTACACAGTACAGTATGGAAAGTATTATTTGGAAAG                         GTTGCTGATTCACTGGAGAAAGGAACTGAACATGAAGATGAATACATGATC
genomic: GTATTCTTTCTTTTGTACACAGTACAGTATGGAAAGTATTATTTGGAAAGgtgagcttct ... ctaatattagGTTGCTGATTCACTGGAGAAAGGAACTGAACATGAAGATGAATACATGATC
EST: gi|193492237|gb|FK455263.1|FK455263
EST:     GTATTCTTTCTTTTGTACACAGTACAGTATGGAAAGTATTATTTGGAAAG                         GTTGCTAATTCACTGGAGAAAGGAACTGAACATGAAGATGAATACATGATC
genomic: GTATTCTTTCTTTTGTACACAGTACAGTATGGAAAGTATTATTTGGAAAGgtgagcttct ... ctaatattagGTTGCTGATTCACTGGAGAAAGGAACTGAACATGAAGATGAATACATGATC
EST: gi|9987096|gb|BE661204.1|BE661204
EST:     GTATTCTTTCTTTTGTACACAGTACAGTATGGAAAGTATTATTTGGAAAG                         GTTGCTGATTCACTGGAGAAAGGAACTGAACATGAAGATGAATACATGATC
genomic: GTATTCTTTCTTTTGTACACAGTACAGTATGGAAAGTATTATTTGGAAAGgtgagcttct ... ctaatattagGTTGCTGATTCACTGGAGAAAGGAACTGAACATGAAGATGAATACATGATC
EST: gi|208134214|gb|GD927919.1|GD927919
EST:     GTATTCTTTCTTTTGTACACAGTACAGTATGGAAAGTATTATTTGGAAAG                         GTTGCTGATTCACTGGAGAAAGGAACTGAACATGAAGATGAATACATGATC
genomic: GTATTCTTTCTTTTGTACACAGTACAGTATGGAAAGTATTATTTGGAAAGgtgagcttct ... ctaatattagGTTGCTGATTCACTGGAGAAAGGAACTGAACATGAAGATGAATACATGATC