Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGTTGCATATGCCACCATCAATAGCTCTTGCAAGCCGAGGGCGTCTACAGGGTCTCAGACTTCAACTTGCACTTCTTGATCGGGAGTTTGATGATCTAGgttagtagttcttttcagtttttgtgatataaattcatactttgctacccatgataatttttagaactttttgaaaatgaattctgatagttaatttagctctagtctcttcagaagtgacatataatatattcatatacagatttttctttccaatttcag

Basic information

species Glycine max
transcript GLYMA11G34130.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G34130.2 (Glycine max), 5'ss of exon 5
lower sequence: Vv13s0019g01960.t01 (Vitis vinifera), 5'ss of exon 4
AGGTTGCATATGCCACCATCAATAGCTCTTGCAAGCCGAGGGCGTCTACAGGGTCTCAGACTTCAACTTGCACTTCTTGATCGGGAGTTTGATGATCTAGgttagt--agttctttt-cagtttttgtgatataaattcatactttgctacccatgataatttttagaactttttgaaaatgaattctgatagttaatttagctctagtctcttcagaagtgacatataatatattcatatacagatttttctttccaatttcag
 ||||||||||||||||||| ||||| |||||||   |||||||| |||| || || || || |||||||||||||||||  |||| |||||||| ||||||  ||  |||| |  | ||||   | |         |    || |   || ||||   || | ||    | | |  | ||  ||    |||  ||  ||                                                                 
CGGTTGCATATGCCACCATCCATAGCACTTGCAACAAGAGGGCGTTTACAAGGCCTTAGGCTCCAACTTGCACTTCTTGACAGGGAATTTGATGACCTAGgtatgttaagttatagtacagtacctctttctctctctttctctctcacacacatgcatatatatatgtatatgtatatatatatatatatatatatatt-----------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192299785|gb|FG987801.1|FG987801
EST:     GGGTCTCAGACTTCAACTTGCACTTCTTGATCGGGAGTTTGATGATCTAG                         ATTATGAAACTTTAAGAGCTCTAGATTCAGATAATGTTTCTACTGCACCCT
genomic: GGGTCTCAGACTTCAACTTGCACTTCTTGATCGGGAGTTTGATGATCTAGgttagtagtt ... ccaatttcagATTATGAAACTTTAAGAGCTCTAGATTCAGATAATGTTTCTACTGCACCCT
EST: gi|151409236|gb|EV279044.1|EV279044
EST:     GGGTCTCAGACTTCAACTTGCACTTCTTGATCGGGAGTTTGATGATCTAG                         ATTATGAAACTTTAAGAGCTCTAGATTCAGATAATGTTTCTACTGCACCCT
genomic: GGGTCTCAGACTTCAACTTGCACTTCTTGATCGGGAGTTTGATGATCTAGgttagtagtt ... ccaatttcagATTATGAAACTTTAAGAGCTCTAGATTCAGATAATGTTTCTACTGCACCCT
EST: gi|298179910|gb|HO025125.1|HO025125
EST:     GGGTCTCAGACTTCGACTTGCACTTCTTGATCGGGAGTTTGATGATCTAG                         ATTATGAAACTTTAAGAGCTCTAGATTCAGATAATGTTTCTACTGCACCCT
genomic: GGGTCTCAGACTTCAACTTGCACTTCTTGATCGGGAGTTTGATGATCTAGgttagtagtt ... ccaatttcagATTATGAAACTTTAAGAGCTCTAGATTCAGATAATGTTTCTACTGCACCCT