Sequence
atgc intronic sequence ATGC exonic sequenceTATGTGATCCAGTGATGGGTGATGAAGGAAAGCTTTATGTTCCTCAAGAGCTAGTATCAGTCTATCGTGAGAAGgtatgactgttcttcaaagatgtttcttcaggtgtgcaagtgcaaataatatatactgtatagtcatatacaatgtagcaaattgaaaacatataaactt...
Basic information
species | Glycine max |
transcript | GLYMA11G33970.2 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA11G33970.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G069758_T04 (Zea mays), 5'ss of exon 6
TATGTGATCCAGTGATGGGTGATGAAGGAAAGCTTTATGTTCCTCAAGAGCTAGTATCAGTCTATCGTGAGAAGgta---tgactgttcttcaaagatgtttcttcaggtgtgcaagtgcaaataatatatactgtatagtcatatacaatgtagcaaattgaaaacatataaactt
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TTTGTGACCCAGTTCTAGGTGATGAAGGAAAACTATATGTTCCTCAGGAGCTAATATCTGTTTATCAACAGAAGgtgatttagcccattttcgtattctatgattttccaatacattaccaaaatatgggaattgcttgtccttacactttttag--aatggcaagtctgttattt-
upper sequence: GLYMA11G33970.1 (Glycine max), 5'ss of exon 6
lower sequence: AT5G37850.3 (Arabidopsis thaliana), 5'ss of exon 5
TATGTGATCCAGTGATGGGTGATGAAGGAAAGCTTTATGTTCCTCAAGAGCTAGTATCAGTCTATCGTGAGAAGgtatgactgttcttcaaagatgtttcttcaggtgtgcaagtg---caaataatatatactgtatagtcatatacaatgtagcaaattgaaaacatataaactt---------------------
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TATGTGATCCGGTGATGGGTGATGAAGGAAAGTTGTATGTGCCTGAAGAACTGGTACATGTTTATCGTGAAAAGgtaaacatgtgactataagaaattattttgtgctttcagttagatcagttgatatatatacttta--tatgttacccttttctcattgtaaatgtgtaaatccctaatggtattattctgttag
upper sequence: GLYMA11G33970.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv14s0006g01660.t01 (Vitis vinifera), 5'ss of exon 6
TATGTGATCCAGTGATGGGTGATGAAGGAAAGCTTTATGTTCCTCAAGAGCTAGTATCAGTCTATCGTGAGAAGgtatgactgttcttcaaagatgtttcttcaggtgtgcaagtgcaaataatatatactgtatagtcatatacaatgtagcaaattgaaaacatataaactt-------
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TTTGTGATCCTGTGATGGGTGATGACGGAAAGCTCTATGTCCCAACAGAGTTAGTGGCAATCTACCGTGAGAAGgtg----agcaatccaatcatgggatattgtgtgtgtaagcttgttctatgttcac-atgtatacaagtgagataca--aaatttgaattatttcactctagtgtttMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|209718098|gb|BW677395.1|BW677395EST: AAGGAAAGCTTTATGTTCCTCAAGAGCTAGTATCAGTCTATCGTGAGAAG GTTGTCCCAGTAGCTTCAGTGTTGACTCCCAACCAGTTTGAGGCAGAACTA
genomic: AAGGAAAGCTTTATGTTCCTCAAGAGCTAGTATCAGTCTATCGTGAGAAGgtatgactgt ... attttggcagGTTGTCCCAGTAGCTTCAGTGTTGACTCCCAACCAGTTTGAGGCAGAACTA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TATGTGATCCAGTGATGGGTGATGAAGGAAAGCTTTATGTTCCTCAAGAGCTAGTATCAGTCTATCGTGAGAAGgtatgactgttcttcaaagatgtttcttcaggtgtgcaagtgcaaataatatatactgtatagtcatatacaatgtagcaaattgaaaacatataaactt
- - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - AGAGCT