Sequence
atgc intronic sequence ATGC exonic sequenceAGCTGTCAAATCTAAGCGTGACTACTTGAGACATCGCAGTAGTTATAACTGGCTCTATTTGTCTCGCCTTGCTGCGCTTAAAGAATTTGCTTTCATGAAGgttttgttttaccttcctctcatttttagtctatgtaactgtatacttgaattgttatattttgtttgatttgctagtgacatatgctttgcttgagcag
Basic information
species | Glycine max |
transcript | GLYMA11G33320.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA11G33320.1 (Glycine max), 5'ss of exon 5
lower sequence: AT3G51270.2 (Arabidopsis thaliana), 5'ss of exon 6
AGCTGTCAAATCTAAGCGTGACTACTTGAGACATCGCAGTAGTTATAACTGGCTCTATTTGTCTCGCCTTGCTGCGCTTAAAGAATTTGCTTTCATGAAGgtt-ttgttttaccttcctctcattt----ttagtctatgtaactgtatacttgaattgttatattttgtttgatttgctagtgacatatgctttgcttgagcag
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GGCTGTCAAATCTAAGCGTGACTACTTGAGGCATCGCAGTAGTTTCAGCTGGTTGTATCTCTCCCGACTTGCAGCTCTCAAGGAGTTTGCTTTTATGAAGgttattgcctt--cttccactaatgtaacactattct-tgtgggtgtatcatc---tttttattttatttttggcctaatgtttgtttggcttctgggtgagcag
upper sequence: GLYMA11G33320.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv05s0094g01560.t01 (Vitis vinifera), 5'ss of exon 5
AGCTGTCAAATCTAAGCGTGACTACTTGAGACATCGCAGTAGTTATAACTGGCTCTATTTGTCTCGCCTTGCTGCGCTTAAAGAATTTGCTTTCATGAAGgttttgttttaccttcctctcatttttagtctatgtaactgtatacttgaattgttatattttgtttgatttgctagtgacatatgctttgcttgagcag
|| || |||||||||||||| || ||| | ||||| | || |||||| |||||||||||||| || |||||||| || ||||||||||| || ||||||||| | | ||| | ||| | | || | ||| | ||||| ||| | ||| || | | | ||||||||||||||
GGCCGTAAAATCTAAGCGTGATTATTTGGGGCATCGGAATAATTATAATTGGCTCTATTTGTCACGGCTTGCTGCACTCAAAGAATTTGCCTTTATGAAGgttcattgctgttttctattgcatttcaattta----attgtctttgctgtttgttccattagttgaaattagcctgatgcttcaactttgcttgagcag
upper sequence: GLYMA11G33320.1 (Glycine max), 5'ss of exon 5
lower sequence: EFJ19722 (Selaginella moellendorffii), 5'ss of exon 5
AGCTGTCAAATCTAAGCGTGACTACTTGAGACATCGCAGTAGTTATAACTGGCTCTATTTGTCTCGCCTTGCTGCGCTTAAAGAATTTGCTTTCATGAAGgttttgttttaccttcctctcatttttagtctatgtaactgtatacttgaattgttatattttgtttgatttgctagtgacatatgctttgcttgagcag
|||||| ||||| ||||| |||||| | | |||||| ||||| | ||||||| | ||| | || || ||||| || || || |||||||||||||||||||| || || | || | ||| | | | | | || ||| |
AGCTGTAAAATCAAAGCGAGACTACCTCAAACATCGAAGTAGCTTTAACTGGTTATATCTTTCACGTCTTGCGGCTCTGAAGGAATTTGCTTTCATGAAGgtagtggctttcactctttctgcgtttttttttttttttta-atgctttgttcag---------------------------------------------
upper sequence: GLYMA11G33320.1 (Glycine max), 5'ss of exon 5
lower sequence: EFJ10419 (Selaginella moellendorffii), 5'ss of exon 5
AGCTGTCAAATCTAAGCGTGACTACTTGAGACATCGCAGTAGTTATAACTGGCTCTATTTGTCTCGCCTTGCTGCGCTTAAAGAATTTGCTTTCATGAAGgttttgttttaccttcctctcatttttagtctatgtaactgtatacttgaattgttatattttgtttgatttgctagtgacatatgctttgcttgagcag
|||||| ||||| ||||| |||||| | | |||||| ||||| | ||||||| | ||| | || || ||||| || || || |||||||||||||||||||| || || | || ||| ||| | | ||| | ||| ||| |
AGCTGTAAAATCAAAGCGAGACTACCTCAAACATCGAAGTAGCTTTAACTGGTTATATCTTTCACGTCTTGCGGCTCTCAAGGAATTTGCTTTCATGAAGgtagtggctt-tcaatctttcagcttttttttttgt--ttttatgctttgttcag---------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|18730095|gb|BM525678.1|BM525678EST: GGCTCTATTTGTCTCGCCTTGCTGCGCTTAAAGAATTTGCTTTCATGAAG GCTTTGGAAACACATGGATTCCCTGTTCCAAATGCAATAGAAAACAATAGA
genomic: GGCTCTATTTGTCTCGCCTTGCTGCGCTTAAAGAATTTGCTTTCATGAAGgttttgtttt ... gcttgagcagGCTTTGGAAACACATGGATTCCCTGTTCCAAATGCAATAGAAAACAATAGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGCTGTCAAATCTAAGCGTGACTACTTGAGACATCGCAGTAGTTATAACTGGCTCTATTTGTCTCGCCTTGCTGCGCTTAAAGAATTTGCTTTCATGAAGgttttgttttaccttcctctcatttttagtctatgtaactgtatacttgaattgttatattttgtttgatttgctagtgacatatgctttgcttgagcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA