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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTCTATAGGTTATTTTCTAGCAGATCTGGCAATGATTCTTTGGCATTTTCCAGCTTTAGGAGGTCTGGAATACgtaagttgaaaacatatcaagttttcttgctatgtttaatatattagataatattagacattgtgtttttttgcacattgaactcagtatccaggttttctgtttaggaagtggtaaactaacttcatttgtttgcaattag

Basic information

species Glycine max
transcript GLYMA11G31750.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G31750.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv06s0004g08450.t01 (Vitis vinifera), 5'ss of exon 5
ATTTCTATAGGTTATTTTCTAGCAGATCTGGCAATGATTCTTTGGCATTTTCCAGCTTTAGGAGGTCTGGAATACgtaagttgaaaacatatcaagttttcttgctatgtttaatatattagataatattagacattgtgtttttttgcacattgaactcagtatccaggttttctgtttaggaagtggtaaactaacttcatttgtttgcaattag
|| || || |||||||||||  ||||  ||||||||||||||||| |||||||||||||||| |||||||| || ||||||  |||    ||  |   |   || ||    ||    ||||  || | || || ||| | |||  ||  |  ||     || ||||| |  |    ||                                       
ATCTCCATTGGTTATTTTCTGTCAGACTTGGCAATGATTCTTTGGAATTTTCCAGCTTTAGGCGGTCTGGAGTATgtaagtacaaagagaatgcatgctcaatgttaga--tatccaattatttactgttggagattatttttccttcaaagtttgtgaca-tatcctgaataaa-gtc--------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192294239|gb|FG986328.1|FG986328
EST:     ATCTGGCAATGATTCTTTGGCATTTTCCAGCTTTAGGAGGTCTGGAATAC                         GTTTTACACCATGGGCTGTCCATGTTTTCTATTATCCAATCTTTGCTAAGT
genomic: ATCTGGCAATGATTCTTTGGCATTTTCCAGCTTTAGGAGGTCTGGAATACgtaagttgaa ... ttgcaattagGTTTTACACCATGGGCTGTCCATGTTTTCTATTATCCAATCTTTGCTAAGT
EST: gi|192314282|gb|FK007020.1|FK007020
EST:     ATCTGGCAATGATTCTTTGGCATTTTCCAGCTTTAGGAGGTCTGGAATAC                         GTTTTACACCATGGGCTGTCCATGTTTTCTATTATCCAATCTTTGCTAAGT
genomic: ATCTGGCAATGATTCTTTGGCATTTTCCAGCTTTAGGAGGTCTGGAATACgtaagttgaa ... ttgcaattagGTTTTACACCATGGGCTGTCCATGTTTTCTATTATCCAATCTTTGCTAAGT
EST: gi|192314283|gb|FK007021.1|FK007021
EST:     ATCTGGCAATGATTCTTTGGCATTTTCCAGCTTTAGGAGGTCTGGAATAC                         GTTTTACACCATGGGCTGTCCATGTTTTCTATTATCCAATCTTTGCTAAGT
genomic: ATCTGGCAATGATTCTTTGGCATTTTCCAGCTTTAGGAGGTCTGGAATACgtaagttgaa ... ttgcaattagGTTTTACACCATGGGCTGTCCATGTTTTCTATTATCCAATCTTTGCTAAGT