1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GTTTGCACAGCCAAGATGAACTTGAGTGATGAGGTAGATCTGGAGGATTATGTTTCTCGCCCTGACAAAATCAGTGCTGCTGAGgtttgtttctttcttgtcctatgacttttgtgcccaataattttatgtaggaatgcttgttattagtttcaggatcatttatctaactattggaagtttt...
species | Glycine max |
transcript | GLYMA11G31470.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TAGATCTGGAGGATTATGTTTCTCGCCCTGACAAAATCAGTGCTGCTGAG ATATCAGCTATTTGTCAAGAAEST: gi|254324498|gb|GR833923.1|GR833923
genomic: TAGATCTGGAGGATTATGTTTCTCGCCCTGACAAAATCAGTGCTGCTGAGgtttgtttct ... gtgcctgcagATATCAGCTATTTGTCAAGAA
EST: TAGATCTGGAGGATTATGTTTCTCGCCCTGACAAAATCAGTGCTGCTGAG ATATCAGCTATTTGTCAAGAAGCTGGAATGCATGCTGTTCGCAAGAATAGAEST: gi|193318156|gb|FK286238.1|FK286238
genomic: TAGATCTGGAGGATTATGTTTCTCGCCCTGACAAAATCAGTGCTGCTGAGgtttgtttct ... gtgcctgcagATATCAGCTATTTGTCAAGAAGCTGGAATGCATGCTGTTCGCAAGAATAGA
EST: TAGATCTGGAGGATTATGTTTCTCGCCCTGACAAAATCAGTGCTGCTGAG ATATCAGCTATTTGTCAAGAAGEST: gi|207844847|gb|GD813604.1|GD813604
genomic: TAGATCTGGAGGATTATGTTTCTCGCCCTGACAAAATCAGTGCTGCTGAGgtttgtttct ... gtgcctgcagATATCAGCTATTTGTCAAGAAG
EST: TAGATCTGGAGGATTATGTTTCTCGCCCTGACAAAATCAGTGCTGCTGAG ATATCAGCTATTTGTCAAGAAGCTGGAATGCATGCTGTTCGCAAGAATAGAEST: gi|208220507|gb|GE017685.1|GE017685
genomic: TAGATCTGGAGGATTATGTTTCTCGCCCTGACAAAATCAGTGCTGCTGAGgtttgtttct ... gtgcctgcagATATCAGCTATTTGTCAAGAAGCTGGAATGCATGCTGTTCGCAAGAATAGA
EST: CTGACAAAATCAGTGCTGCTGAG ATATCAGCTATTTGTCAAGAAGCTGGAATGCATGCTGTTCGCAAGAATAGAEST: gi|208259049|gb|GE051982.1|GE051982
genomic: CTGACAAAATCAGTGCTGCTGAGgtttgtttct ... gtgcctgcagATATCAGCTATTTGTCAAGAAGCTGGAATGCATGCTGTTCGCAAGAATAGA
EST: TAGATCTGGAGGATTATGTTTCTCGCCCTGACAAAATCAGTGCTGCTGAG ATATCAGCTATTTGTCAAGAAGCTGGAATGCATGCTGTTCGCAAGAATAGAEST: gi|15664967|gb|BI702338.1|BI702338
genomic: TAGATCTGGAGGATTATGTTTCTCGCCCTGACAAAATCAGTGCTGCTGAGgtttgtttct ... gtgcctgcagATATCAGCTATTTGTCAAGAAGCTGGAATGCATGCTGTTCGCAAGAATAGA
EST: TAGATCTGGAGGATTATGTTTCTCGCCCTGACAAAATCAGTGCTGCTGAG ATATCAGCTATTTGTCAAGAAGCTGGAATGCATGCTGTTCGCAAGAATAGAEST: gi|7589710|gb|AW705471.1|AW705471
genomic: TAGATCTGGAGGATTATGTTTCTCGCCCTGACAAAATCAGTGCTGCTGAGgtttgtttct ... gtgcctgcagATATCAGCTATTTGTCAAGAAGCTGGAATGCATGCTGTTCGCAAGAATAGA
EST: TAGATCTGGAGGATTATGTTTCTCGCCCTGACAAAATCAGTGCTGCTGAG ATATCAGCTATTTGTCAAGAAGCTGGAATGCATGCTGTTCGCAAGAATAGAEST: gi|21594594|gb|BQ610203.1|BQ610203
genomic: TAGATCTGGAGGATTATGTTTCTCGCCCTGACAAAATCAGTGCTGCTGAGgtttgtttct ... gtgcctgcagATATCAGCTATTTGTCAAGAAGCTGGAATGCATGCTGTTCGCAAGAATAGA
EST: TAGATCTGGAGGATTATGTTTCTCGCCCTGACAAAATCAGTGCTGCTGAG ATATCAGCTATTTGTCAAGAAGCTGGAATGCATGCTGTTCGCAAGAATAGA
genomic: TAGATCTGGAGGATTATGTTTCTCGCCCTGACAAAATCAGTGCTGCTGAGgtttgtttct ... gtgcctgcagATATCAGCTATTTGTCAAGAAGCTGGAATGCATGCTGTTCGCAAGAATAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTTGCACAGCCAAGATGAACTTGAGTGATGAGGTAGATCTGGAGGATTATGTTTCTCGCCCTGACAAAATCAGTGCTGCTGAGgtttgtttctttcttgtcctatgacttttgtgcccaataattttatgtaggaatgcttgttattagtttcaggatcatttatctaactattggaagtttt
- - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT