Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGACTATTGCTGGTATCAAATATACTGGAATGTATAGCCCAATGCATTCCAGCAACAAGgtataatgctggaattttcttttactgtttcttaaaattaaaatttacttttggtttctgaccgttggttaatttgccttttccttttccag

Basic information

species Glycine max
transcript GLYMA11G21600.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G21600.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv13s0067g03330.t01 (Vitis vinifera), 5'ss of exon 6
TTGACTATTGCTGGTATCAAATATACTGGAATGTATAGCCCAATGCATTCCAGCAACAAGgtataatgctggaattttcttttactgtttcttaaaattaaaatttacttttggtttctgaccgttggttaatttgccttttccttttccag
|| ||| ||||||||||||||| | ||||||||||||| || |||||||| ||||||||||||   |  |  |||    |||   | ||||          || || ||||   ||  |   |   | ||||||  | | |   |||| |||
TTAACTGTTGCTGGTATCAAATTTTCTGGAATGTATAGTCCGATGCATTCTAGCAACAAGgtac--taatataatccattttctgtatttcc---------aactttctttaaattatt--tccaagattaattcac-tgtcagtttttcag