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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACATTTTGGAAGTTCTTCACGGGATTGGTATAGTGGATGGAGTTGCATGAAGACCTTGATAGCTAAGGGATTAATTGTAAAATCAAGTTGCCCTGCTAAgtatgttattccatagtgtgcatgtcttttttcacaatgtactgctactctgttaatttttgtatataaatctttcttttaatcttttatattatctttc...

Basic information

species Glycine max
transcript GLYMA11G20970.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G20970.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv13s0019g01290.t01 (Vitis vinifera), 5'ss of exon 5
GACATTTTGGAAGTTCTTCACGGGATTGGTATAGTGGATGGAGTTGCATGAAGACCTTGATAGCTAAGGGATTAATTGTAAAATCAAGTTGCCCTGCTAAgtatgttattccatagtgtgcatgtcttttttcacaatgtactgctactctgttaatttttgtatataaatctttcttttaatcttttatattatctttc----
| |||||||||||||||||  |||| ||||||||||||||||| ||||||||||| |||||| | || ||| || |||| ||||| ||||||||||| ||||||     || ||    ||||  | ||  |   |  | | ||| |  | ||     |    |   |  || ||      ||  ||||||||  || ||     
GGCATTTTGGAAGTTCTTCTAGGGAATGGTATAGTGGATGGAGCTGCATGAAGACATTGATAACCAAAGGACTAGTTGTGAAATCTAGTTGCCCTGCGAAgtatagccctcaat----tgcaatttttcatctccccttttctggttatatgcatcatgaattggttttattttctggaaaaatttttatatgttcatttgttg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192322584|gb|FK014705.1|FK014705
EST:     AAGACCTTGATAGCTAAGGGATTAATTGTAAAATCAAGTTGCCCTGCTAA                         GTACATGCTAACTCAAGAAGGTAAAGAAGCAGCACGCGATTGTCTTGCAAG
genomic: AAGACCTTGATAGCTAAGGGATTAATTGTAAAATCAAGTTGCCCTGCTAAgtatgttatt ... ttgtgctcagGTACATGCTAACTCAAGAAGGTAAGGAAGCAGCACGCGATTGTCTTGCAAG