Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGCAGTTCGTAGGGCTACCATAGCCCAGAAATTTATACCAGTATTCATGGGTAGTGCTTTCAAAAATAAGgtgaccagtgaattactttcaatttgtatatcttttttttgtgtgtacaatgacggatacaatcactttcagtttgtatattgctgcatagctctacttt...

Basic information

species Glycine max
transcript GLYMA11G16460.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G16460.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os03g36780.1 (Oryza sativa), 5'ss of exon 5
GAAGCAGTTCGTAGGGCTACCATAGCCCAGAAATTTATACCAGTATTCATGGGTAGTGCTTTCAAAAATAAGgtgaccagtgaattactttcaatttgtatatcttttttttgtgtgtacaatgacggatac--aatcactttcagtttgtatattgctgcatagctctacttt
| |||  |||| || || ||  |||| |  || ||||||||||| | |||||| ||||| ||||||||||||||          |     |||  || | ||| |   | ||||   | |    |  || |    |  | | | |     | | | |    | |  ||   |  
GCAGCTATTCGAAGAGCAACAGTAGCACGCAAGTTTATACCAGTTTACATGGGAAGTGCATTCAAAAATAAGgtttttttctgttgttcctcatattttttatttaactattgttcatcctgccattgaaaatggaatattgtaataccttttgtagtaatagaagtcggtt--

upper sequence: GLYMA11G16460.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G056393_T01 (Zea mays), 5'ss of exon 5
GAAGCAGTTCGTAGGGCTACCATAGCCCAGAAATTTATACCAGTATTCATGGGTAGTGCTTTCAAAAATAAGgtgaccagtgaattactttcaatttgtatatcttttttttgtgtgtacaatgacggatac---aatcactttcagtttgtatattgctgcatagctctacttt---
|  ||  |||| || |||||  | || | ||| || |||||||||| |||||| ||||| ||||||||||||||     |||   |||  | | |||||  || |  ||    | || | |||    |||     | |   ||||    ||  ||| |  |   | |   |  ||   
GCGGCTATTCGAAGAGCTACAGTGGCACGGAAGTTCATACCAGTATACATGGGAAGTGCATTCAAAAATAAGgt---tcgtgg-ctacaatta-tttgttcat-tcgttgaaatttgaaaaattcttgattttttatttcttttccaaatggttatagaagataatcatcatcttgat

upper sequence: GLYMA11G16460.1 (Glycine max), 5'ss of exon 5
lower sequence: AT2G45030.1 (Arabidopsis thaliana), 5'ss of exon 5
GAAGCAGTTCGTAGGGCTACCATAGCCCAGAAATTTATACCAGTATTCATGGGTAGTGCTTTCAAAAATAAGgtgaccagtgaattactttcaat--ttgtatat-cttttttttgtgtg-tacaatgacggatacaatcactttcagt-ttgtatat-tgctgcatagctctacttt---------------------------------
|||||  ||||||| ||||||||||| || || ||| | || ||||| ||||||||||| |||||||| ||||| |    |   |    | |||   |  ||||| |     ||||  || || | | ||  |        ||| |  | |||| | | |  |  | || | |  |                                   
GAAGCTATTCGTAGAGCTACCATAGCACAAAAGTTTGTTCCTGTATTTATGGGTAGTGCATTCAAAAACAAGgtaattgatttttggaatccaaagatgatatatgcgcaagtttggatgatatattcacttacgtttctccttgccctcttgtgtctgtattaaaaagttttcatcatctgccgtgctcccttttttttttaatctgcag

upper sequence: GLYMA11G16460.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv15s0021g02450.t01 (Vitis vinifera), 5'ss of exon 5
GAAGCAGTTCGTAGGGCTACCATAGCCCAGAAATTTATACCAGTATTCATGGGTAGTGCTTTCAAAAATAAGgtg--accagtgaattactttcaatttgtatatcttttttttgtgtgtacaatgacggatacaatcactttcagttt--gtatattgctgcatagctctacttt
|| ||| | || ||||||||  | || |||||||||||||| || |||||||| ||||| |||||||| |||||   |  ||    ||| ||||    | |  ||  | ||    | | || |   |   || ||  ||  || | |||   ||| |   |  |  |  | |    
GAGGCAATCCGCAGGGCTACAGTTGCACAGAAATTTATACCGGTCTTCATGGGCAGTGCATTCAAAAACAAGgtattatgaggttgttaatttcttcctttgaatgatattcagctctttatagcaa--aatccaggcaaattaaattttcatatgtcaatagaaggaaccaaa--