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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGAGGAATGGAAGCCCTGCTCAGAAAGAGAAATATTTACCAAAGgttctagttctgtgcaatttaatcttatttattttcagtgaaatgtttgctgccttgccctcttgccgatgatgtgtaaaagattgactttatcaaacaa...

Basic information

species Glycine max
transcript GLYMA11G15900.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17400326|gb|BM177108.1|BM177108
EST:     GTGAGGAATGGAAGCCCTGCTCAGAAAGAGAAATATTTACCAAAG                         CTTATTTCTGGGGATCATGTGGGAGCTTTGGCAATGAGCGAGCCCAATT
genomic: GTGAGGAATGGAAGCCCTGCTCAGAAAGAGAAATATTTACCAAAGgttctagttc ... acttttgaagCTTATTTCTGGGGATCATGTGGGAGCTTTGGCAATGAGCGAGCCCAATT
EST: gi|213600672|gb|DB956190.1|DB956190
EST:     GTGAGGAATGGAAGCCCTGCTCAGAAAGAGAAATATTTACCAAAG                         CTTATTTCTGGGGATCATGTGGGAGCTTTGGCAATGAGCGAGCCCAATT
genomic: GTGAGGAATGGAAGCCCTGCTCAGAAAGAGAAATATTTACCAAAGgttctagttc ... acttttgaagCTTATTTCTGGGGATCATGTGGGAGCTTTGGCAATGAGCGAGCCCAATT
EST: gi|207751983|gb|GD722128.1|GD722128
EST:     GTGAGGAATGGAAGCCCTGCTCAGAAAGAGAAATATTTACCAAAG                         CTTATTTCTGGGGATCATGTGGGAGCTTTGGCAATGAGCGAGCCCAATT
genomic: GTGAGGAATGGAAGCCCTGCTCAGAAAGAGAAATATTTACCAAAGgttctagttc ... acttttgaagCTTATTTCTGGGGATCATGTGGGAGCTTTGGCAATGAGCGAGCCCAATT
EST: gi|16346614|gb|BI972209.1|BI972209
EST:     ACGAGGAATGGAAGCCCTGCTCAGAAAGAGAAATATTTACCAAAG                         CTTATTTCTGGGGATCATGTGGGAGCTTTGGCAATGAGCGAGCCCAATT
genomic: GTGAGGAATGGAAGCCCTGCTCAGAAAGAGAAATATTTACCAAAGgttctagttc ... acttttgaagCTTATTTCTGGGGATCATGTGGGAGCTTTGGCAATGAGCGAGCCCAATT
EST: gi|15663805|gb|BI701176.1|BI701176
EST:     GTGAGGAATGGAAGCCCTGCTCAGAAAGAGAAATATTTACCAAAG                         CTTATTTCTGGGGATCATGTGGGAGCTTTGGCAATGAGCGAGCCCAATT
genomic: GTGAGGAATGGAAGCCCTGCTCAGAAAGAGAAATATTTACCAAAGgttctagttc ... acttttgaagCTTATTTCTGGGGATCATGTGGGAGCTTTGGCAATGAGCGAGCCCAATT
EST: gi|15814693|gb|BI786968.1|BI786968
EST:     GTGAGGAATGGAAGCCCTGCTCAGAAAGAGAAATATTTACCAAAG                         CTTATTTCTGGGGATCATGTGGGAGCTTTGGCAATGATCGAGCCCAATT
genomic: GTGAGGAATGGAAGCCCTGCTCAGAAAGAGAAATATTTACCAAAGgttctagttc ... acttttgaagCTTATTTCTGGGGATCATGTGGGAGCTTTGGCAATGAGCGAGCCCAATT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTGAGGAATGGAAGCCCTGCTCAGAAAGAGAAATATTTACCAAAGgttctagttctgtgcaatttaatcttatttattttcagtgaaatgtttgctgccttgccctcttgccgatgatgtgtaaaagattgactttatcaaacaa

- - - - TGGAAG
- - - - - - - - - - - -  AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccctctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtaaaaga