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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTCTTTTATCACATATGAGGCGCTGCACAAACTTGGAATTCCCCAGCCCATTCAATTCTTGCAGgtagctaaattactcctatcctgattctttttctaaataataactattaggatcatagatatatgtgaaataaatactttgtactacttgtttccctagcttagttaatgaagcctaagtttgcgcaatccaatttag

Basic information

species Glycine max
transcript GLYMA11G15470.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G15470.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv06s0004g03970.t01 (Vitis vinifera), 5'ss of exon 5
AATTCTTTTATCACATATGAGGCGCTGCACAAACTTGGAATTCCCCAGCCCATTCAATTCTTGCAGgtagctaaattactcctatcctgattctttttctaaataataactattagg---atcatagatatatgt--gaaataaatactttgtact----acttgtttccctagcttagttaatgaagcctaagtttgcgcaatccaatttag
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AATTCTTTTATCAGCTACGAGGTTCTGCTCAAACTTGGAATTCCCCAGCCTCTCCAGTATCTGCAGgtatctta-ttgtttgtttttcagttatgtttttggagaacattttaaagatgaatttaggatcgacttcagaagtatatgccacatatttaaagattgttcaatggtcttatctaatcaaat-tgtggtcatgcc-tctaattag-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254348097|gb|GR851776.1|GR851776
EST:     ATGAGGCGCTGCACAAACTTGGAATTCCCCAGCCCATTCAATTCTTGCAG                         TCCAGATATCCTGAAGGCAAACCTCTAGTTTCAACATTTGTTCATCCATCT
genomic: ATGAGGCGCTGCACAAACTTGGAATTCCCCAGCCCATTCAATTCTTGCAGgtagctaaat ... tccaatttagTCCAGATATCCTGAAGGCAAACCTCTAGTTTCAACATTTGTTCATCCATCT
EST: gi|15663582|gb|BI700953.1|BI700953
EST:     ATGAGGCGCTGCACAAACTTGGAATTCCCCAGCCCATTCTATTCTTGCAG                         TCCAGATATCCTGAAGGCAAACCTCTAGTTTCAACATTTGTTCATCCATCT
genomic: ATGAGGCGCTGCACAAACTTGGAATTCCCCAGCCCATTCAATTCTTGCAGgtagctaaat ... tccaatttagTCCAGATATCCTGAAGGCAAACCTCTAGTTTCAACATTTGTTCATCCATCT
EST: gi|193424666|gb|FK390781.1|FK390781
EST:     ATGAGGCGCTACACAAACTTGGAATTCCCCAGCCCATTCAATTCTTGCAG                         TCCAGATATCCTGAAGGCAAACCTCTAGTTTCAACATTTGTTCATCCATCT
genomic: ATGAGGCGCTGCACAAACTTGGAATTCCCCAGCCCATTCAATTCTTGCAGgtagctaaat ... tccaatttagTCCAGATATCCTGAAGGCAAACCTCTAGTTTCAACATTTGTTCATCCATCT