Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTGACATTCAAACAAATACAAGGCGATTCCAGTCTCTATTCCGTgtaagagtcctagaaggaatctaatgtttatttgcactgatatggataatctaactaatgtagtgattattgcttccttctcccaattattttccatattcgttgtgtttccctcaagttcag

Basic information

species Glycine max
transcript GLYMA11G15030.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G15030.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv06s0004g04350.t01 (Vitis vinifera), 5'ss of exon 5
GATTGACATTCAAACAAATACAAGGCGATTCCAGTCTCTATTCCGTgtaagagtcctagaaggaatctaatgtttatttgcactgatatggataatctaactaa-tgtagtgattattgcttccttctcccaattattttccatattcgttgtgtttccctcaagttcag
||||||||| |||||||| |||| ||| ||||||||||| || ||||||||| |||||  | | ||  |||| |||       | || ||  |  |  || | | | |  | |  |   ||| |||   | | |    ||||   |  |||  |                
GATTGACATCCAAACAAACACAATGCGCTTCCAGTCTCTCTTTCGTgtaagattcctatcaaggatagaatgcttaccgtttataatttgtctgttgaaaatgagttttctaaagacaacttgcttactctagtc--cttcctgttgggttcag----------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17964327|gb|BM271064.1|BM271064
EST:     GATTGACATTCAAACAAATACAAGGCGATTCCAGTCTCTATTCCGT                         TACCTTTTGGAAGATGTTGGATTAGACCACACTCGATTGAATAAAATTCCT
genomic: GATTGACATTCAAACAAATACAAGGCGATTCCAGTCTCTATTCCGTgtaagagtcc ... tcaagttcagTACCTTTTGGAAGATGTTGGATTAGACCACACTCGATTGAATAAAATTCCT